miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 90648 0.66 0.960594
Target:  5'- ---uGGGAGGcGCcgcgGCGAG-GGUGGCa -3'
miRNA:   3'- ggguCCCUCCuCGa---UGUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 168428 0.66 0.960594
Target:  5'- gCCUGGcGGGGGAGaggggGCAGGgc-UGGCg -3'
miRNA:   3'- -GGGUC-CCUCCUCga---UGUUCaucACCG- -5'
28899 5' -54.2 NC_006146.1 + 112138 0.66 0.960594
Target:  5'- cCUCGGugcugacauuGGAGGuAGCguuggcgGCAuguGUGGUGGCa -3'
miRNA:   3'- -GGGUC----------CCUCC-UCGa------UGUu--CAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 90031 0.66 0.960594
Target:  5'- -gCAGGGGGaAGCgguggaGCAGGaGGUGGUg -3'
miRNA:   3'- ggGUCCCUCcUCGa-----UGUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 170291 0.66 0.960594
Target:  5'- gCCUGGcGGGGGAGaggggGCAGGgc-UGGCg -3'
miRNA:   3'- -GGGUC-CCUCCUCga---UGUUCaucACCG- -5'
28899 5' -54.2 NC_006146.1 + 169360 0.66 0.960594
Target:  5'- gCCUGGcGGGGGAGaggggGCAGGgc-UGGCg -3'
miRNA:   3'- -GGGUC-CCUCCUCga---UGUUCaucACCG- -5'
28899 5' -54.2 NC_006146.1 + 167496 0.66 0.960594
Target:  5'- gCCUGGcGGGGGAGaggggGCAGGgc-UGGCg -3'
miRNA:   3'- -GGGUC-CCUCCUCga---UGUUCaucACCG- -5'
28899 5' -54.2 NC_006146.1 + 128195 0.66 0.956928
Target:  5'- gCCCAGGGGGGcGCcGCGGcgccgGGCc -3'
miRNA:   3'- -GGGUCCCUCCuCGaUGUUcaucaCCG- -5'
28899 5' -54.2 NC_006146.1 + 48317 0.66 0.953037
Target:  5'- aCCGucGGAGGuGCUGgcGGUGGUGGg -3'
miRNA:   3'- gGGUc-CCUCCuCGAUguUCAUCACCg -5'
28899 5' -54.2 NC_006146.1 + 139457 0.66 0.953037
Target:  5'- gCCCGGGGGGGuGCcUGCAcuggAGaAGgucuccacGGCa -3'
miRNA:   3'- -GGGUCCCUCCuCG-AUGU----UCaUCa-------CCG- -5'
28899 5' -54.2 NC_006146.1 + 21909 0.67 0.948915
Target:  5'- gCCGaGGAGGAGggGCGGGgaAGcUGGCa -3'
miRNA:   3'- gGGUcCCUCCUCgaUGUUCa-UC-ACCG- -5'
28899 5' -54.2 NC_006146.1 + 166780 0.67 0.948915
Target:  5'- aCCAGGaGGGGAGUUugAAa-AG-GGCa -3'
miRNA:   3'- gGGUCC-CUCCUCGAugUUcaUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 57614 0.67 0.948915
Target:  5'- uCCCGGuGGGGGccaagguGCUACAGGaaaAG-GGCc -3'
miRNA:   3'- -GGGUC-CCUCCu------CGAUGUUCa--UCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 108610 0.67 0.948915
Target:  5'- uCCCAGGuAGGGGUccGCGgaGGcGGUGGUg -3'
miRNA:   3'- -GGGUCCcUCCUCGa-UGU--UCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 11043 0.67 0.948915
Target:  5'- aCCAGGGAGGuGUUugG-GUAcgacGGCu -3'
miRNA:   3'- gGGUCCCUCCuCGAugUuCAUca--CCG- -5'
28899 5' -54.2 NC_006146.1 + 132940 0.67 0.944561
Target:  5'- aCCCGcGGAGGGG--GgGGGUGGUGGa -3'
miRNA:   3'- -GGGUcCCUCCUCgaUgUUCAUCACCg -5'
28899 5' -54.2 NC_006146.1 + 101863 0.67 0.944561
Target:  5'- aCCAcGGGuGGcGggGCGAGgacGGUGGCg -3'
miRNA:   3'- gGGU-CCCuCCuCgaUGUUCa--UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 129248 0.67 0.944561
Target:  5'- gCCCAGGuGAGGcGCgaggguCAGGgauGUGGg -3'
miRNA:   3'- -GGGUCC-CUCCuCGau----GUUCau-CACCg -5'
28899 5' -54.2 NC_006146.1 + 138321 0.67 0.944112
Target:  5'- gUgGGGGAGGAGCUaagguccGCGAGauuUGG-GGUa -3'
miRNA:   3'- gGgUCCCUCCUCGA-------UGUUC---AUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 166866 0.67 0.93997
Target:  5'- gCCCggcgggAGGGGGGAGCggaggGCGAGgAG-GaGCg -3'
miRNA:   3'- -GGG------UCCCUCCUCGa----UGUUCaUCaC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.