miRNA display CGI


Results 41 - 60 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 150724 0.67 0.93997
Target:  5'- -aCAGGGuggacGGGGCUggacucgggGCGAGUGGacgGGCc -3'
miRNA:   3'- ggGUCCCu----CCUCGA---------UGUUCAUCa--CCG- -5'
28899 5' -54.2 NC_006146.1 + 44124 0.67 0.93997
Target:  5'- gCCCGGcgaGGAGGGGggGCAGGacGUGcGCa -3'
miRNA:   3'- -GGGUC---CCUCCUCgaUGUUCauCAC-CG- -5'
28899 5' -54.2 NC_006146.1 + 167294 0.67 0.939498
Target:  5'- gCCGgcGGGAGGGGCcggcgccUGCAGGggGGgccGGCg -3'
miRNA:   3'- gGGU--CCCUCCUCG-------AUGUUCa-UCa--CCG- -5'
28899 5' -54.2 NC_006146.1 + 169158 0.67 0.939498
Target:  5'- gCCGgcGGGAGGGGCcggcgccUGCAGGggGGgccGGCg -3'
miRNA:   3'- gGGU--CCCUCCUCG-------AUGUUCa-UCa--CCG- -5'
28899 5' -54.2 NC_006146.1 + 168226 0.67 0.939498
Target:  5'- gCCGgcGGGAGGGGCcggcgccUGCAGGggGGgccGGCg -3'
miRNA:   3'- gGGU--CCCUCCUCG-------AUGUUCa-UCa--CCG- -5'
28899 5' -54.2 NC_006146.1 + 61353 0.67 0.938067
Target:  5'- uCUCaAGGGAGGAguGCUGCAGGUcaaccugcugucuGUGaGCu -3'
miRNA:   3'- -GGG-UCCCUCCU--CGAUGUUCAu------------CAC-CG- -5'
28899 5' -54.2 NC_006146.1 + 160660 0.67 0.934146
Target:  5'- cCUCAGGGAGGccuucagGGCcgGCAcaugaccagggccGGUAGaGGCa -3'
miRNA:   3'- -GGGUCCCUCC-------UCGa-UGU-------------UCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 140126 0.67 0.930073
Target:  5'- --gAGGGGGuGGCgg-AGGUGGUGGCg -3'
miRNA:   3'- gggUCCCUCcUCGaugUUCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 155102 0.67 0.930073
Target:  5'- aUCAGGGAGGucAGgaACAccuucuGGUGG-GGCa -3'
miRNA:   3'- gGGUCCCUCC--UCgaUGU------UCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 5200 0.67 0.930073
Target:  5'- uCCCuGGGccuggGGGAGCUAgGGGUGcaGGUc -3'
miRNA:   3'- -GGGuCCC-----UCCUCGAUgUUCAUcaCCG- -5'
28899 5' -54.2 NC_006146.1 + 59412 0.67 0.930073
Target:  5'- uCCCGGGuucaaGAGGAGCaaguaUGCcGGggGGUGGUu -3'
miRNA:   3'- -GGGUCC-----CUCCUCG-----AUGuUCa-UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 53120 0.67 0.930073
Target:  5'- gCCCGGcccGGGGGAGCgcgACGGuugccuccucuGUGGcGGCg -3'
miRNA:   3'- -GGGUC---CCUCCUCGa--UGUU-----------CAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 74455 0.68 0.924764
Target:  5'- cCCCgAGGGAGcAGUggACAGGgGGUGGa -3'
miRNA:   3'- -GGG-UCCCUCcUCGa-UGUUCaUCACCg -5'
28899 5' -54.2 NC_006146.1 + 101905 0.68 0.924764
Target:  5'- gCCCAGGucuGGAGCUGaAGGUuuugGGCu -3'
miRNA:   3'- -GGGUCCcu-CCUCGAUgUUCAuca-CCG- -5'
28899 5' -54.2 NC_006146.1 + 131521 0.68 0.924764
Target:  5'- gCCCAGGGuaaccGGGCgcCGAGUgggacguuuGGUGGUg -3'
miRNA:   3'- -GGGUCCCuc---CUCGauGUUCA---------UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 128813 0.68 0.924764
Target:  5'- -aCAGGGAGGGGCggcgGCAGagGG-GGUc -3'
miRNA:   3'- ggGUCCCUCCUCGa---UGUUcaUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 73540 0.68 0.924764
Target:  5'- gCCAGGcuccGGAGCUccccggGCGGGUGguuGUGGCc -3'
miRNA:   3'- gGGUCCcu--CCUCGA------UGUUCAU---CACCG- -5'
28899 5' -54.2 NC_006146.1 + 49791 0.68 0.924764
Target:  5'- uCUCAGG-AGGGGCaGgAAGaugGGUGGCu -3'
miRNA:   3'- -GGGUCCcUCCUCGaUgUUCa--UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 3370 0.68 0.919215
Target:  5'- uCCCAGGaGAGGGGCcg-GGGgcGcGGCc -3'
miRNA:   3'- -GGGUCC-CUCCUCGaugUUCauCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 1506 0.68 0.919215
Target:  5'- uCCCAGGaGAGGGGCcg-GGGgcGcGGCc -3'
miRNA:   3'- -GGGUCC-CUCCUCGaugUUCauCaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.