Results 1 - 20 of 153 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 137348 | 0.66 | 0.970284 |
Target: 5'- aCCCccGGAGGAGCacCAGGgccaGGCa -3' miRNA: 3'- -GGGucCCUCCUCGauGUUCaucaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 112138 | 0.66 | 0.960594 |
Target: 5'- cCUCGGugcugacauuGGAGGuAGCguuggcgGCAuguGUGGUGGCa -3' miRNA: 3'- -GGGUC----------CCUCC-UCGa------UGUu--CAUCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 41354 | 0.66 | 0.964038 |
Target: 5'- gCCCAGGGccuGGC----GGUGGUGGCc -3' miRNA: 3'- -GGGUCCCuccUCGauguUCAUCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 169642 | 0.66 | 0.970284 |
Target: 5'- uCCCGuuGGcGGGGAGaaUACAgcuGGgcGUGGCg -3' miRNA: 3'- -GGGU--CC-CUCCUCg-AUGU---UCauCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 169360 | 0.66 | 0.960594 |
Target: 5'- gCCUGGcGGGGGAGaggggGCAGGgc-UGGCg -3' miRNA: 3'- -GGGUC-CCUCCUCga---UGUUCaucACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 128195 | 0.66 | 0.956928 |
Target: 5'- gCCCAGGGGGGcGCcGCGGcgccgGGCc -3' miRNA: 3'- -GGGUCCCUCCuCGaUGUUcaucaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 90031 | 0.66 | 0.960594 |
Target: 5'- -gCAGGGGGaAGCgguggaGCAGGaGGUGGUg -3' miRNA: 3'- ggGUCCCUCcUCGa-----UGUUCaUCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 90648 | 0.66 | 0.960594 |
Target: 5'- ---uGGGAGGcGCcgcgGCGAG-GGUGGCa -3' miRNA: 3'- ggguCCCUCCuCGa---UGUUCaUCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 167496 | 0.66 | 0.960594 |
Target: 5'- gCCUGGcGGGGGAGaggggGCAGGgc-UGGCg -3' miRNA: 3'- -GGGUC-CCUCCUCga---UGUUCaucACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 170291 | 0.66 | 0.960594 |
Target: 5'- gCCUGGcGGGGGAGaggggGCAGGgc-UGGCg -3' miRNA: 3'- -GGGUC-CCUCCUCga---UGUUCaucACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 168428 | 0.66 | 0.960594 |
Target: 5'- gCCUGGcGGGGGAGaggggGCAGGgc-UGGCg -3' miRNA: 3'- -GGGUC-CCUCCUCga---UGUUCaucACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 139457 | 0.66 | 0.953037 |
Target: 5'- gCCCGGGGGGGuGCcUGCAcuggAGaAGgucuccacGGCa -3' miRNA: 3'- -GGGUCCCUCCuCG-AUGU----UCaUCa-------CCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 88737 | 0.66 | 0.970284 |
Target: 5'- aUCCAGGuauGGAGgaUGCAGGggcucuuGUGGCu -3' miRNA: 3'- -GGGUCCcu-CCUCg-AUGUUCau-----CACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 118433 | 0.66 | 0.967266 |
Target: 5'- uCCCuGGccGAGGuccugcacggcGGCUACAAcggGGUGGCc -3' miRNA: 3'- -GGGuCC--CUCC-----------UCGAUGUUca-UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 39873 | 0.66 | 0.967266 |
Target: 5'- cCCgGGGGAGGAgGCU--GAGgcugAGcGGCc -3' miRNA: 3'- -GGgUCCCUCCU-CGAugUUCa---UCaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 26255 | 0.66 | 0.967266 |
Target: 5'- gCCAGaGGuGGGGGC-ACGGGUGGcGGa -3' miRNA: 3'- gGGUC-CC-UCCUCGaUGUUCAUCaCCg -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 33215 | 0.66 | 0.964038 |
Target: 5'- gCCGGaGGGGGAGC--CGGGaUGG-GGCu -3' miRNA: 3'- gGGUC-CCUCCUCGauGUUC-AUCaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 52080 | 0.66 | 0.964038 |
Target: 5'- gCCAGGGAGGcgGGCauCAAGUucgaGGUGcuGCu -3' miRNA: 3'- gGGUCCCUCC--UCGauGUUCA----UCAC--CG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 37391 | 0.66 | 0.963028 |
Target: 5'- uUCCAGacuguuauaaagacGGAGGGGCcgcggUGCAAGUAGccccGGUg -3' miRNA: 3'- -GGGUC--------------CCUCCUCG-----AUGUUCAUCa---CCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 41135 | 0.66 | 0.962687 |
Target: 5'- cCCgGGGGAGGGGCgugcgcugacucugUGCAauaucgcaaucucGGUAGaUGGa -3' miRNA: 3'- -GGgUCCCUCCUCG--------------AUGU-------------UCAUC-ACCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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