miRNA display CGI


Results 1 - 20 of 153 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 170291 0.66 0.960594
Target:  5'- gCCUGGcGGGGGAGaggggGCAGGgc-UGGCg -3'
miRNA:   3'- -GGGUC-CCUCCUCga---UGUUCaucACCG- -5'
28899 5' -54.2 NC_006146.1 + 169642 0.66 0.970284
Target:  5'- uCCCGuuGGcGGGGAGaaUACAgcuGGgcGUGGCg -3'
miRNA:   3'- -GGGU--CC-CUCCUCg-AUGU---UCauCACCG- -5'
28899 5' -54.2 NC_006146.1 + 169573 0.69 0.894641
Target:  5'- cCCCGGGGcccGAGCgcgcguCGGGUGG-GGCc -3'
miRNA:   3'- -GGGUCCCuc-CUCGau----GUUCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 169360 0.66 0.960594
Target:  5'- gCCUGGcGGGGGAGaggggGCAGGgc-UGGCg -3'
miRNA:   3'- -GGGUC-CCUCCUCga---UGUUCaucACCG- -5'
28899 5' -54.2 NC_006146.1 + 169158 0.67 0.939498
Target:  5'- gCCGgcGGGAGGGGCcggcgccUGCAGGggGGgccGGCg -3'
miRNA:   3'- gGGU--CCCUCCUCG-------AUGUUCa-UCa--CCG- -5'
28899 5' -54.2 NC_006146.1 + 168709 0.66 0.967266
Target:  5'- uCCCGuuGGcGGGGAGaaugACAgcuGGgcGUGGCg -3'
miRNA:   3'- -GGGU--CC-CUCCUCga--UGU---UCauCACCG- -5'
28899 5' -54.2 NC_006146.1 + 168641 0.66 0.967266
Target:  5'- cCCCGGGGcccGAGCgcGCGucGGUGG-GGCc -3'
miRNA:   3'- -GGGUCCCuc-CUCGa-UGU--UCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 168428 0.66 0.960594
Target:  5'- gCCUGGcGGGGGAGaggggGCAGGgc-UGGCg -3'
miRNA:   3'- -GGGUC-CCUCCUCga---UGUUCaucACCG- -5'
28899 5' -54.2 NC_006146.1 + 168226 0.67 0.939498
Target:  5'- gCCGgcGGGAGGGGCcggcgccUGCAGGggGGgccGGCg -3'
miRNA:   3'- gGGU--CCCUCCUCG-------AUGUUCa-UCa--CCG- -5'
28899 5' -54.2 NC_006146.1 + 167777 0.66 0.967266
Target:  5'- uCCCGuuGGcGGGGAGaaugACAgcuGGgcGUGGCg -3'
miRNA:   3'- -GGGU--CC-CUCCUCga--UGU---UCauCACCG- -5'
28899 5' -54.2 NC_006146.1 + 167708 0.69 0.894641
Target:  5'- cCCCGGGGcccGAGCgcgcguCGGGUGG-GGCc -3'
miRNA:   3'- -GGGUCCCuc-CUCGau----GUUCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 167496 0.66 0.960594
Target:  5'- gCCUGGcGGGGGAGaggggGCAGGgc-UGGCg -3'
miRNA:   3'- -GGGUC-CCUCCUCga---UGUUCaucACCG- -5'
28899 5' -54.2 NC_006146.1 + 167294 0.67 0.939498
Target:  5'- gCCGgcGGGAGGGGCcggcgccUGCAGGggGGgccGGCg -3'
miRNA:   3'- gGGU--CCCUCCUCG-------AUGUUCa-UCa--CCG- -5'
28899 5' -54.2 NC_006146.1 + 166866 0.67 0.93997
Target:  5'- gCCCggcgggAGGGGGGAGCggaggGCGAGgAG-GaGCg -3'
miRNA:   3'- -GGG------UCCCUCCUCGa----UGUUCaUCaC-CG- -5'
28899 5' -54.2 NC_006146.1 + 166780 0.67 0.948915
Target:  5'- aCCAGGaGGGGAGUUugAAa-AG-GGCa -3'
miRNA:   3'- gGGUCC-CUCCUCGAugUUcaUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 165751 0.69 0.858783
Target:  5'- gUCAGGGAGGGGgaugggaaUAUggGUAgGUGGUu -3'
miRNA:   3'- gGGUCCCUCCUCg-------AUGuuCAU-CACCG- -5'
28899 5' -54.2 NC_006146.1 + 162389 0.72 0.72425
Target:  5'- -aCGGGGgcuuugcccuGGGAGUaACAAGUGGUGGg -3'
miRNA:   3'- ggGUCCC----------UCCUCGaUGUUCAUCACCg -5'
28899 5' -54.2 NC_006146.1 + 162013 0.68 0.9074
Target:  5'- aCCCuGGGAGaccGGCUcCAcGGUggAGUGGCa -3'
miRNA:   3'- -GGGuCCCUCc--UCGAuGU-UCA--UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 161714 0.73 0.673908
Target:  5'- cUCCuGGGAGaaGGCUugGGGgugGGUGGCa -3'
miRNA:   3'- -GGGuCCCUCc-UCGAugUUCa--UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 160660 0.67 0.934146
Target:  5'- cCUCAGGGAGGccuucagGGCcgGCAcaugaccagggccGGUAGaGGCa -3'
miRNA:   3'- -GGGUCCCUCC-------UCGa-UGU-------------UCAUCaCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.