Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2890 | 3' | -59.7 | NC_001493.1 | + | 107610 | 0.67 | 0.662148 |
Target: 5'- gUGUCGGCUUCCGUUucaccguguguggUGCCgugaguugaUCCGGGGg -3' miRNA: 3'- -AUAGUCGAAGGCAG-------------GCGG---------GGGCCUCg -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 36877 | 0.67 | 0.663155 |
Target: 5'- gGUC-GCUggCgGUCCGCCCcgCCGGuguGCg -3' miRNA: 3'- aUAGuCGAa-GgCAGGCGGG--GGCCu--CG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 124288 | 0.67 | 0.673204 |
Target: 5'- aAUUGGgUUaagaacaCGggUCGCCCCCGGGGCu -3' miRNA: 3'- aUAGUCgAAg------GCa-GGCGGGGGCCUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 8734 | 0.67 | 0.673204 |
Target: 5'- aAUUGGgUUaagaacaCGggUCGCCCCCGGGGCu -3' miRNA: 3'- aUAGUCgAAg------GCa-GGCGGGGGCCUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 126772 | 0.66 | 0.692201 |
Target: 5'- gUGUgAGCgUCCGUCCcacgggucgucgaGCCCUCGGGa- -3' miRNA: 3'- -AUAgUCGaAGGCAGG-------------CGGGGGCCUcg -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 11218 | 0.66 | 0.692201 |
Target: 5'- gUGUgAGCgUCCGUCCcacgggucgucgaGCCCUCGGGa- -3' miRNA: 3'- -AUAgUCGaAGGCAGG-------------CGGGGGCCUcg -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 63094 | 0.66 | 0.693196 |
Target: 5'- --aCGGUgu-CGUUCGCUCCCGcGGGCa -3' miRNA: 3'- auaGUCGaagGCAGGCGGGGGC-CUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 109852 | 0.66 | 0.703123 |
Target: 5'- -uUCGGCc-UCGagCGCgCCCGGGGCg -3' miRNA: 3'- auAGUCGaaGGCagGCGgGGGCCUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 14708 | 0.66 | 0.703123 |
Target: 5'- gAUCGGCguauacggUCCGU-CGUCCgCCGGcGCu -3' miRNA: 3'- aUAGUCGa-------AGGCAgGCGGG-GGCCuCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 100803 | 0.66 | 0.703123 |
Target: 5'- --aCAGUgucgUUCCGgcgacaacccCCGCCCCCGaAGCu -3' miRNA: 3'- auaGUCG----AAGGCa---------GGCGGGGGCcUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 39908 | 0.66 | 0.71299 |
Target: 5'- gAUC-GCUUCCcucGUCgCGCUCCgGGAGa -3' miRNA: 3'- aUAGuCGAAGG---CAG-GCGGGGgCCUCg -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 133941 | 0.66 | 0.721814 |
Target: 5'- gGUCAGUUUgaaacccCCGUCCacgGCCa-CGGGGCg -3' miRNA: 3'- aUAGUCGAA-------GGCAGG---CGGggGCCUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 18387 | 0.66 | 0.721814 |
Target: 5'- gGUCAGUUUgaaacccCCGUCCacgGCCa-CGGGGCg -3' miRNA: 3'- aUAGUCGAA-------GGCAGG---CGGggGCCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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