miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2890 3' -59.7 NC_001493.1 + 14856 1.08 0.001201
Target:  5'- gUAUCAGCUUCCGUCCGCCCCCGGAGCc -3'
miRNA:   3'- -AUAGUCGAAGGCAGGCGGGGGCCUCG- -5'
2890 3' -59.7 NC_001493.1 + 130410 1.08 0.001201
Target:  5'- gUAUCAGCUUCCGUCCGCCCCCGGAGCc -3'
miRNA:   3'- -AUAGUCGAAGGCAGGCGGGGGCCUCG- -5'
2890 3' -59.7 NC_001493.1 + 130490 0.74 0.304322
Target:  5'- cAUCAGCcagaacccggCgGUCCGCCCCaugGGGGCa -3'
miRNA:   3'- aUAGUCGaa--------GgCAGGCGGGGg--CCUCG- -5'
2890 3' -59.7 NC_001493.1 + 14936 0.74 0.304322
Target:  5'- cAUCAGCcagaacccggCgGUCCGCCCCaugGGGGCa -3'
miRNA:   3'- aUAGUCGaa--------GgCAGGCGGGGg--CCUCG- -5'
2890 3' -59.7 NC_001493.1 + 126872 0.71 0.404589
Target:  5'- gGUCAGa--UCGUCCGCCUCgGGGGUc -3'
miRNA:   3'- aUAGUCgaaGGCAGGCGGGGgCCUCG- -5'
2890 3' -59.7 NC_001493.1 + 11318 0.71 0.404589
Target:  5'- gGUCAGa--UCGUCCGCCUCgGGGGUc -3'
miRNA:   3'- aUAGUCgaaGGCAGGCGGGGgCCUCG- -5'
2890 3' -59.7 NC_001493.1 + 28251 0.71 0.439367
Target:  5'- cUGUCAGagUCCGuaUCUGCUCgCGGAGCg -3'
miRNA:   3'- -AUAGUCgaAGGC--AGGCGGGgGCCUCG- -5'
2890 3' -59.7 NC_001493.1 + 90136 0.7 0.457384
Target:  5'- --cCGGCcggUCCGUgCGCgaCCCCGGAGg -3'
miRNA:   3'- auaGUCGa--AGGCAgGCG--GGGGCCUCg -5'
2890 3' -59.7 NC_001493.1 + 63139 0.7 0.494554
Target:  5'- --aCGGUg-CCGUUCGCUCCCGcGGGCu -3'
miRNA:   3'- auaGUCGaaGGCAGGCGGGGGC-CUCG- -5'
2890 3' -59.7 NC_001493.1 + 37271 0.7 0.504063
Target:  5'- --cCAGCUUCgGaagCacaagcgaGUCCCCGGAGCg -3'
miRNA:   3'- auaGUCGAAGgCa--Gg-------CGGGGGCCUCG- -5'
2890 3' -59.7 NC_001493.1 + 109662 0.68 0.586547
Target:  5'- cGUCAGUgucugUCCGUaugucaacggucacaUCGCCCCgGGcGCg -3'
miRNA:   3'- aUAGUCGa----AGGCA---------------GGCGGGGgCCuCG- -5'
2890 3' -59.7 NC_001493.1 + 63472 0.68 0.612702
Target:  5'- aUAUUcGCggugUCGUUCGCUCCCGuGGGCa -3'
miRNA:   3'- -AUAGuCGaa--GGCAGGCGGGGGC-CUCG- -5'
2890 3' -59.7 NC_001493.1 + 4763 0.67 0.632892
Target:  5'- -cUCGGUUUCCacggGUCCGCCUCC--AGCu -3'
miRNA:   3'- auAGUCGAAGG----CAGGCGGGGGccUCG- -5'
2890 3' -59.7 NC_001493.1 + 120317 0.67 0.632892
Target:  5'- -cUCGGUUUCCacggGUCCGCCUCC--AGCu -3'
miRNA:   3'- auAGUCGAAGG----CAGGCGGGGGccUCG- -5'
2890 3' -59.7 NC_001493.1 + 87639 0.67 0.642991
Target:  5'- cGUCgAGuCUUCgGaugacUCCGCCCgUGGAGCc -3'
miRNA:   3'- aUAG-UC-GAAGgC-----AGGCGGGgGCCUCG- -5'
2890 3' -59.7 NC_001493.1 + 21237 0.67 0.642991
Target:  5'- -uUCAGg--CCG-CCGCCCCUGGugaAGCc -3'
miRNA:   3'- auAGUCgaaGGCaGGCGGGGGCC---UCG- -5'
2890 3' -59.7 NC_001493.1 + 62803 0.67 0.642991
Target:  5'- gGUCAcGgUgCCGgUCGCCCCCGuGGGCu -3'
miRNA:   3'- aUAGU-CgAaGGCaGGCGGGGGC-CUCG- -5'
2890 3' -59.7 NC_001493.1 + 62719 0.67 0.642991
Target:  5'- gGUCAcGgUgCCGgUCGCCCCCGuGGGCu -3'
miRNA:   3'- aUAGU-CgAaGGCaGGCGGGGGC-CUCG- -5'
2890 3' -59.7 NC_001493.1 + 62964 0.67 0.642991
Target:  5'- gGUCAcGgUgCCGgUCGCCCCCGuGGGCu -3'
miRNA:   3'- aUAGU-CgAaGGCaGGCGGGGGC-CUCG- -5'
2890 3' -59.7 NC_001493.1 + 15181 0.67 0.647028
Target:  5'- -uUCGGCU-CCGggaCGCCCCgcuacgacggacuacUGGGGCa -3'
miRNA:   3'- auAGUCGAaGGCag-GCGGGG---------------GCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.