Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2890 | 3' | -59.7 | NC_001493.1 | + | 28251 | 0.71 | 0.439367 |
Target: 5'- cUGUCAGagUCCGuaUCUGCUCgCGGAGCg -3' miRNA: 3'- -AUAGUCgaAGGC--AGGCGGGgGCCUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 133941 | 0.66 | 0.721814 |
Target: 5'- gGUCAGUUUgaaacccCCGUCCacgGCCa-CGGGGCg -3' miRNA: 3'- aUAGUCGAA-------GGCAGG---CGGggGCCUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 18387 | 0.66 | 0.721814 |
Target: 5'- gGUCAGUUUgaaacccCCGUCCacgGCCa-CGGGGCg -3' miRNA: 3'- aUAGUCGAA-------GGCAGG---CGGggGCCUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 100803 | 0.66 | 0.703123 |
Target: 5'- --aCAGUgucgUUCCGgcgacaacccCCGCCCCCGaAGCu -3' miRNA: 3'- auaGUCG----AAGGCa---------GGCGGGGGCcUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 63094 | 0.66 | 0.693196 |
Target: 5'- --aCGGUgu-CGUUCGCUCCCGcGGGCa -3' miRNA: 3'- auaGUCGaagGCAGGCGGGGGC-CUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 124288 | 0.67 | 0.673204 |
Target: 5'- aAUUGGgUUaagaacaCGggUCGCCCCCGGGGCu -3' miRNA: 3'- aUAGUCgAAg------GCa-GGCGGGGGCCUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 8734 | 0.67 | 0.673204 |
Target: 5'- aAUUGGgUUaagaacaCGggUCGCCCCCGGGGCu -3' miRNA: 3'- aUAGUCgAAg------GCa-GGCGGGGGCCUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 36877 | 0.67 | 0.663155 |
Target: 5'- gGUC-GCUggCgGUCCGCCCcgCCGGuguGCg -3' miRNA: 3'- aUAGuCGAa-GgCAGGCGGG--GGCCu--CG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 107610 | 0.67 | 0.662148 |
Target: 5'- gUGUCGGCUUCCGUUucaccguguguggUGCCgugaguugaUCCGGGGg -3' miRNA: 3'- -AUAGUCGAAGGCAG-------------GCGG---------GGGCCUCg -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 15181 | 0.67 | 0.647028 |
Target: 5'- -uUCGGCU-CCGggaCGCCCCgcuacgacggacuacUGGGGCa -3' miRNA: 3'- auAGUCGAaGGCag-GCGGGG---------------GCCUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 62964 | 0.67 | 0.642991 |
Target: 5'- gGUCAcGgUgCCGgUCGCCCCCGuGGGCu -3' miRNA: 3'- aUAGU-CgAaGGCaGGCGGGGGC-CUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 63139 | 0.7 | 0.494554 |
Target: 5'- --aCGGUg-CCGUUCGCUCCCGcGGGCu -3' miRNA: 3'- auaGUCGaaGGCAGGCGGGGGC-CUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 109662 | 0.68 | 0.586547 |
Target: 5'- cGUCAGUgucugUCCGUaugucaacggucacaUCGCCCCgGGcGCg -3' miRNA: 3'- aUAGUCGa----AGGCA---------------GGCGGGGgCCuCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 63472 | 0.68 | 0.612702 |
Target: 5'- aUAUUcGCggugUCGUUCGCUCCCGuGGGCa -3' miRNA: 3'- -AUAGuCGaa--GGCAGGCGGGGGC-CUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 87639 | 0.67 | 0.642991 |
Target: 5'- cGUCgAGuCUUCgGaugacUCCGCCCgUGGAGCc -3' miRNA: 3'- aUAG-UC-GAAGgC-----AGGCGGGgGCCUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 21237 | 0.67 | 0.642991 |
Target: 5'- -uUCAGg--CCG-CCGCCCCUGGugaAGCc -3' miRNA: 3'- auAGUCgaaGGCaGGCGGGGGCC---UCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 62719 | 0.67 | 0.642991 |
Target: 5'- gGUCAcGgUgCCGgUCGCCCCCGuGGGCu -3' miRNA: 3'- aUAGU-CgAaGGCaGGCGGGGGC-CUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 62803 | 0.67 | 0.642991 |
Target: 5'- gGUCAcGgUgCCGgUCGCCCCCGuGGGCu -3' miRNA: 3'- aUAGU-CgAaGGCaGGCGGGGGC-CUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 39908 | 0.66 | 0.71299 |
Target: 5'- gAUC-GCUUCCcucGUCgCGCUCCgGGAGa -3' miRNA: 3'- aUAGuCGAAGG---CAG-GCGGGGgCCUCg -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 14856 | 1.08 | 0.001201 |
Target: 5'- gUAUCAGCUUCCGUCCGCCCCCGGAGCc -3' miRNA: 3'- -AUAGUCGAAGGCAGGCGGGGGCCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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