Results 21 - 33 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2890 | 3' | -59.7 | NC_001493.1 | + | 126772 | 0.66 | 0.692201 |
Target: 5'- gUGUgAGCgUCCGUCCcacgggucgucgaGCCCUCGGGa- -3' miRNA: 3'- -AUAgUCGaAGGCAGG-------------CGGGGGCCUcg -5' |
|||||||
2890 | 3' | -59.7 | NC_001493.1 | + | 11218 | 0.66 | 0.692201 |
Target: 5'- gUGUgAGCgUCCGUCCcacgggucgucgaGCCCUCGGGa- -3' miRNA: 3'- -AUAgUCGaAGGCAGG-------------CGGGGGCCUcg -5' |
|||||||
2890 | 3' | -59.7 | NC_001493.1 | + | 109852 | 0.66 | 0.703123 |
Target: 5'- -uUCGGCc-UCGagCGCgCCCGGGGCg -3' miRNA: 3'- auAGUCGaaGGCagGCGgGGGCCUCG- -5' |
|||||||
2890 | 3' | -59.7 | NC_001493.1 | + | 14708 | 0.66 | 0.703123 |
Target: 5'- gAUCGGCguauacggUCCGU-CGUCCgCCGGcGCu -3' miRNA: 3'- aUAGUCGa-------AGGCAgGCGGG-GGCCuCG- -5' |
|||||||
2890 | 3' | -59.7 | NC_001493.1 | + | 37271 | 0.7 | 0.504063 |
Target: 5'- --cCAGCUUCgGaagCacaagcgaGUCCCCGGAGCg -3' miRNA: 3'- auaGUCGAAGgCa--Gg-------CGGGGGCCUCG- -5' |
|||||||
2890 | 3' | -59.7 | NC_001493.1 | + | 90136 | 0.7 | 0.457384 |
Target: 5'- --cCGGCcggUCCGUgCGCgaCCCCGGAGg -3' miRNA: 3'- auaGUCGa--AGGCAgGCG--GGGGCCUCg -5' |
|||||||
2890 | 3' | -59.7 | NC_001493.1 | + | 11318 | 0.71 | 0.404589 |
Target: 5'- gGUCAGa--UCGUCCGCCUCgGGGGUc -3' miRNA: 3'- aUAGUCgaaGGCAGGCGGGGgCCUCG- -5' |
|||||||
2890 | 3' | -59.7 | NC_001493.1 | + | 126872 | 0.71 | 0.404589 |
Target: 5'- gGUCAGa--UCGUCCGCCUCgGGGGUc -3' miRNA: 3'- aUAGUCgaaGGCAGGCGGGGgCCUCG- -5' |
|||||||
2890 | 3' | -59.7 | NC_001493.1 | + | 14936 | 0.74 | 0.304322 |
Target: 5'- cAUCAGCcagaacccggCgGUCCGCCCCaugGGGGCa -3' miRNA: 3'- aUAGUCGaa--------GgCAGGCGGGGg--CCUCG- -5' |
|||||||
2890 | 3' | -59.7 | NC_001493.1 | + | 130490 | 0.74 | 0.304322 |
Target: 5'- cAUCAGCcagaacccggCgGUCCGCCCCaugGGGGCa -3' miRNA: 3'- aUAGUCGaa--------GgCAGGCGGGGg--CCUCG- -5' |
|||||||
2890 | 3' | -59.7 | NC_001493.1 | + | 14856 | 1.08 | 0.001201 |
Target: 5'- gUAUCAGCUUCCGUCCGCCCCCGGAGCc -3' miRNA: 3'- -AUAGUCGAAGGCAGGCGGGGGCCUCG- -5' |
|||||||
2890 | 3' | -59.7 | NC_001493.1 | + | 130410 | 1.08 | 0.001201 |
Target: 5'- gUAUCAGCUUCCGUCCGCCCCCGGAGCc -3' miRNA: 3'- -AUAGUCGAAGGCAGGCGGGGGCCUCG- -5' |
|||||||
2890 | 3' | -59.7 | NC_001493.1 | + | 39908 | 0.66 | 0.71299 |
Target: 5'- gAUC-GCUUCCcucGUCgCGCUCCgGGAGa -3' miRNA: 3'- aUAGuCGAAGG---CAG-GCGGGGgCCUCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home