miRNA display CGI


Results 41 - 60 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28902 3' -60.6 NC_006146.1 + 114143 0.66 0.719396
Target:  5'- uGC-GCGUGCUCcgCgAUCa-GGCCCCg -3'
miRNA:   3'- uCGuCGUACGAGa-GgUGGgaCCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 110297 0.66 0.719396
Target:  5'- uGGCcucGGCGUaggcGUUCaucgCCGCCCUGuCCCCg -3'
miRNA:   3'- -UCG---UCGUA----CGAGa---GGUGGGACcGGGG- -5'
28902 3' -60.6 NC_006146.1 + 129277 0.66 0.719396
Target:  5'- uGgGGC-UGgUCUgCGCCCgGGCCCa -3'
miRNA:   3'- uCgUCGuACgAGAgGUGGGaCCGGGg -5'
28902 3' -60.6 NC_006146.1 + 12031 0.66 0.719396
Target:  5'- cGGCAGCuacguggcggGUGCgg-CCACCa--GCCCCa -3'
miRNA:   3'- -UCGUCG----------UACGagaGGUGGgacCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 108476 0.66 0.719396
Target:  5'- --uGGgAUGCUucugCUUCugCCUGGCCuCCg -3'
miRNA:   3'- ucgUCgUACGA----GAGGugGGACCGG-GG- -5'
28902 3' -60.6 NC_006146.1 + 48362 0.66 0.718429
Target:  5'- cAGCgGGCcgGC-CUcgaguuccgcgaaCCACCCgGGCUCCg -3'
miRNA:   3'- -UCG-UCGuaCGaGA-------------GGUGGGaCCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 3459 0.66 0.718429
Target:  5'- cGgAGCAUGCcCgcccgaccccCCGCCCcgggaccccgcgcUGGCCCCc -3'
miRNA:   3'- uCgUCGUACGaGa---------GGUGGG-------------ACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 2527 0.66 0.718429
Target:  5'- cGgAGCAUGCcCgcccgaccccCCGCCCcgggaccccgcgcUGGCCCCc -3'
miRNA:   3'- uCgUCGUACGaGa---------GGUGGG-------------ACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 1595 0.66 0.718429
Target:  5'- cGgAGCAUGCcCgcccgaccccCCGCCCcgggaccccgcgcUGGCCCCc -3'
miRNA:   3'- uCgUCGUACGaGa---------GGUGGG-------------ACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 664 0.66 0.718429
Target:  5'- cGgAGCAUGCcCgcccgaccccCCGCCCcgggaccccgcgcUGGCCCCc -3'
miRNA:   3'- uCgUCGUACGaGa---------GGUGGG-------------ACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 118267 0.66 0.7097
Target:  5'- gAGCc-CAUGUUCUCgGCCC-GGUCCa -3'
miRNA:   3'- -UCGucGUACGAGAGgUGGGaCCGGGg -5'
28902 3' -60.6 NC_006146.1 + 70620 0.66 0.7097
Target:  5'- cGGCcucuGC-UGC-CUCCGCCCcauuGCCCCc -3'
miRNA:   3'- -UCGu---CGuACGaGAGGUGGGac--CGGGG- -5'
28902 3' -60.6 NC_006146.1 + 151464 0.66 0.7097
Target:  5'- aAGCGGCGcGCcgCgUCCACgUUGGCUUCg -3'
miRNA:   3'- -UCGUCGUaCGa-G-AGGUGgGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 128237 0.66 0.7097
Target:  5'- cGCGGgGaGCUCUuccgCUACCuCUGGgCCCa -3'
miRNA:   3'- uCGUCgUaCGAGA----GGUGG-GACCgGGG- -5'
28902 3' -60.6 NC_006146.1 + 42668 0.66 0.7097
Target:  5'- aGGUAGCGgaagaGCUCcCCGCgccgaaagagcgUCUGGCCCg -3'
miRNA:   3'- -UCGUCGUa----CGAGaGGUG------------GGACCGGGg -5'
28902 3' -60.6 NC_006146.1 + 43635 0.66 0.7097
Target:  5'- gGGCGGCGggGCguggCCGCCUggggagaggGGCCCg -3'
miRNA:   3'- -UCGUCGUa-CGaga-GGUGGGa--------CCGGGg -5'
28902 3' -60.6 NC_006146.1 + 40155 0.66 0.7097
Target:  5'- gGGCGGCGUcUUCUCCggggaagaGCCCgccGCCCUc -3'
miRNA:   3'- -UCGUCGUAcGAGAGG--------UGGGac-CGGGG- -5'
28902 3' -60.6 NC_006146.1 + 247 0.66 0.7097
Target:  5'- -cCGGCcuUGCUCUCuCACUCUugcuacuugcGGCCCUg -3'
miRNA:   3'- ucGUCGu-ACGAGAG-GUGGGA----------CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 114690 0.66 0.699942
Target:  5'- uGGaCGGCucgcgGCUCgUCCgcgagACCCgGGCCCUg -3'
miRNA:   3'- -UC-GUCGua---CGAG-AGG-----UGGGaCCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 161952 0.66 0.699942
Target:  5'- uGGCAGCAgGCUaaaCUUC-CCCa-GCCCCa -3'
miRNA:   3'- -UCGUCGUaCGA---GAGGuGGGacCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.