Results 21 - 40 of 185 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28902 | 3' | -60.6 | NC_006146.1 | + | 35429 | 0.66 | 0.72902 |
Target: 5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3' miRNA: 3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5' |
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28902 | 3' | -60.6 | NC_006146.1 | + | 35708 | 0.66 | 0.72902 |
Target: 5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3' miRNA: 3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5' |
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28902 | 3' | -60.6 | NC_006146.1 | + | 35336 | 0.66 | 0.72902 |
Target: 5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3' miRNA: 3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5' |
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28902 | 3' | -60.6 | NC_006146.1 | + | 35243 | 0.66 | 0.72902 |
Target: 5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3' miRNA: 3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5' |
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28902 | 3' | -60.6 | NC_006146.1 | + | 35150 | 0.66 | 0.72902 |
Target: 5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3' miRNA: 3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5' |
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28902 | 3' | -60.6 | NC_006146.1 | + | 35057 | 0.66 | 0.72902 |
Target: 5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3' miRNA: 3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5' |
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28902 | 3' | -60.6 | NC_006146.1 | + | 34500 | 0.66 | 0.72902 |
Target: 5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3' miRNA: 3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5' |
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28902 | 3' | -60.6 | NC_006146.1 | + | 34593 | 0.66 | 0.72902 |
Target: 5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3' miRNA: 3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5' |
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28902 | 3' | -60.6 | NC_006146.1 | + | 34686 | 0.66 | 0.72902 |
Target: 5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3' miRNA: 3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5' |
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28902 | 3' | -60.6 | NC_006146.1 | + | 34779 | 0.66 | 0.72902 |
Target: 5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3' miRNA: 3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5' |
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28902 | 3' | -60.6 | NC_006146.1 | + | 34872 | 0.66 | 0.72902 |
Target: 5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3' miRNA: 3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5' |
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28902 | 3' | -60.6 | NC_006146.1 | + | 34964 | 0.66 | 0.72902 |
Target: 5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3' miRNA: 3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5' |
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28902 | 3' | -60.6 | NC_006146.1 | + | 68860 | 0.66 | 0.719396 |
Target: 5'- uGGCaAGCAgGCUggcgaCAgCCUGGCCCUg -3' miRNA: 3'- -UCG-UCGUaCGAgag--GUgGGACCGGGG- -5' |
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28902 | 3' | -60.6 | NC_006146.1 | + | 97809 | 0.66 | 0.719396 |
Target: 5'- gGGCccggacGC-UGCUgUCCACCCUGGUgaaguaCCa -3' miRNA: 3'- -UCGu-----CGuACGAgAGGUGGGACCGg-----GG- -5' |
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28902 | 3' | -60.6 | NC_006146.1 | + | 93992 | 0.66 | 0.719396 |
Target: 5'- uGCAGCcccGCgg-UCACCuCUGGCuCCCa -3' miRNA: 3'- uCGUCGua-CGagaGGUGG-GACCG-GGG- -5' |
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28902 | 3' | -60.6 | NC_006146.1 | + | 129277 | 0.66 | 0.719396 |
Target: 5'- uGgGGC-UGgUCUgCGCCCgGGCCCa -3' miRNA: 3'- uCgUCGuACgAGAgGUGGGaCCGGGg -5' |
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28902 | 3' | -60.6 | NC_006146.1 | + | 155190 | 0.66 | 0.719396 |
Target: 5'- -aCAGCcccCUCUCCucgGCCagUGGCCCCg -3' miRNA: 3'- ucGUCGuacGAGAGG---UGGg-ACCGGGG- -5' |
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28902 | 3' | -60.6 | NC_006146.1 | + | 81878 | 0.66 | 0.719396 |
Target: 5'- cGCGGCAcacacguuggGCUCggUCACCaaaaUGcGCCCCa -3' miRNA: 3'- uCGUCGUa---------CGAGa-GGUGGg---AC-CGGGG- -5' |
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28902 | 3' | -60.6 | NC_006146.1 | + | 110297 | 0.66 | 0.719396 |
Target: 5'- uGGCcucGGCGUaggcGUUCaucgCCGCCCUGuCCCCg -3' miRNA: 3'- -UCG---UCGUA----CGAGa---GGUGGGACcGGGG- -5' |
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28902 | 3' | -60.6 | NC_006146.1 | + | 114143 | 0.66 | 0.719396 |
Target: 5'- uGC-GCGUGCUCcgCgAUCa-GGCCCCg -3' miRNA: 3'- uCGuCGUACGAGa-GgUGGgaCCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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