miRNA display CGI


Results 21 - 40 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28902 3' -60.6 NC_006146.1 + 25446 0.71 0.422278
Target:  5'- gGGCAGCAgGCUCaaCACCCcGGaCCUCc -3'
miRNA:   3'- -UCGUCGUaCGAGagGUGGGaCC-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 16212 0.71 0.422278
Target:  5'- gGGCAGCAgGCUCaaCACCCcGGaCCUCc -3'
miRNA:   3'- -UCGUCGUaCGAGagGUGGGaCC-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 153102 0.73 0.341929
Target:  5'- gAGUAGCAcaUGCUCUCggaGCCCgGGaCCCUc -3'
miRNA:   3'- -UCGUCGU--ACGAGAGg--UGGGaCC-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 22146 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 114459 0.68 0.568095
Target:  5'- uGGUGGCGUGCUCUCUGCCaaauaccgggGGCaugacgcuuaggcuCCCg -3'
miRNA:   3'- -UCGUCGUACGAGAGGUGGga--------CCG--------------GGG- -5'
28902 3' -60.6 NC_006146.1 + 53166 0.71 0.439661
Target:  5'- uGCGGCGgugGCcggaaggCUCgGCCUcGGCCCCg -3'
miRNA:   3'- uCGUCGUa--CGa------GAGgUGGGaCCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 115729 0.71 0.405314
Target:  5'- aAGguGaCA-GCg-UCCACCCUGGCCUCc -3'
miRNA:   3'- -UCguC-GUaCGagAGGUGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 19068 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 45532 0.71 0.439661
Target:  5'- gGGCcugGGCcuccuuggGCUUggCCGCCCUGGCCuCCg -3'
miRNA:   3'- -UCG---UCGua------CGAGa-GGUGGGACCGG-GG- -5'
28902 3' -60.6 NC_006146.1 + 15990 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 13134 0.71 0.422278
Target:  5'- gGGCAGCAgGCUCaaCACCCcGGaCCUCc -3'
miRNA:   3'- -UCGUCGUaCGAGagGUGGGaCC-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 28524 0.71 0.422278
Target:  5'- gGGCAGCAgGCUCaaCACCCcGGaCCUCc -3'
miRNA:   3'- -UCGUCGUaCGAGagGUGGGaCC-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 157371 0.72 0.388786
Target:  5'- uGCAGCAgGUUCcugUCCACgCCUcGGCCCa -3'
miRNA:   3'- uCGUCGUaCGAG---AGGUG-GGA-CCGGGg -5'
28902 3' -60.6 NC_006146.1 + 109323 0.72 0.357085
Target:  5'- uGCAGCcgGCUCUuccUCAgCgUGGCCCUc -3'
miRNA:   3'- uCGUCGuaCGAGA---GGUgGgACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 165249 0.74 0.299289
Target:  5'- cGCGGCugGUGCUCgUCC-CCCUGuCCCCc -3'
miRNA:   3'- uCGUCG--UACGAG-AGGuGGGACcGGGG- -5'
28902 3' -60.6 NC_006146.1 + 25224 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 44552 0.68 0.597733
Target:  5'- gGGCuGCGguggacugaaccuuUGCgugUUCC-UCCUGGCCCCc -3'
miRNA:   3'- -UCGuCGU--------------ACGa--GAGGuGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 145044 0.68 0.571044
Target:  5'- gGGCAGCGUGagcgCgcaGCCCUGGCgCUg -3'
miRNA:   3'- -UCGUCGUACga--GaggUGGGACCGgGG- -5'
28902 3' -60.6 NC_006146.1 + 158426 0.69 0.532084
Target:  5'- uGGUAGCA-GCUCUUgA-CCUGGUCCUu -3'
miRNA:   3'- -UCGUCGUaCGAGAGgUgGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 95398 0.7 0.466481
Target:  5'- aGGCAGCucacGCUggugCUCUugCC-GGCCCCc -3'
miRNA:   3'- -UCGUCGua--CGA----GAGGugGGaCCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.