miRNA display CGI


Results 21 - 40 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28902 3' -60.6 NC_006146.1 + 3962 0.73 0.327243
Target:  5'- uGCAGCA-GCaCUCC-CCCUGGCUgCa -3'
miRNA:   3'- uCGUCGUaCGaGAGGuGGGACCGGgG- -5'
28902 3' -60.6 NC_006146.1 + 153102 0.73 0.341929
Target:  5'- gAGUAGCAcaUGCUCUCggaGCCCgGGaCCCUc -3'
miRNA:   3'- -UCGUCGU--ACGAGAGg--UGGGaCC-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 47299 0.73 0.341929
Target:  5'- uGCAGCcgGgaCUCCuCCCgGGCCUCc -3'
miRNA:   3'- uCGUCGuaCgaGAGGuGGGaCCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 144862 0.72 0.357085
Target:  5'- uGCAGCG-GCUCUCC-CCCUuuuCCCCu -3'
miRNA:   3'- uCGUCGUaCGAGAGGuGGGAcc-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 109323 0.72 0.357085
Target:  5'- uGCAGCcgGCUCUuccUCAgCgUGGCCCUc -3'
miRNA:   3'- uCGUCGuaCGAGA---GGUgGgACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 43387 0.72 0.357085
Target:  5'- gGGCAGCAgcgGCUgcCUCUGCCCcGGCUgCg -3'
miRNA:   3'- -UCGUCGUa--CGA--GAGGUGGGaCCGGgG- -5'
28902 3' -60.6 NC_006146.1 + 136702 0.72 0.357085
Target:  5'- gGGCGGCGcgaGgUC-CCugCCUGGCCCa -3'
miRNA:   3'- -UCGUCGUa--CgAGaGGugGGACCGGGg -5'
28902 3' -60.6 NC_006146.1 + 11650 0.72 0.375886
Target:  5'- uGGCGGCGuUGCaccgauauaaugCCAgCCUGGCCCCc -3'
miRNA:   3'- -UCGUCGU-ACGaga---------GGUgGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 130302 0.72 0.388786
Target:  5'- cGGCGGCAUGCggagguUCggCCGCCCagGGCCa- -3'
miRNA:   3'- -UCGUCGUACG------AGa-GGUGGGa-CCGGgg -5'
28902 3' -60.6 NC_006146.1 + 157371 0.72 0.388786
Target:  5'- uGCAGCAgGUUCcugUCCACgCCUcGGCCCa -3'
miRNA:   3'- uCGUCGUaCGAG---AGGUG-GGA-CCGGGg -5'
28902 3' -60.6 NC_006146.1 + 115729 0.71 0.405314
Target:  5'- aAGguGaCA-GCg-UCCACCCUGGCCUCc -3'
miRNA:   3'- -UCguC-GUaCGagAGGUGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 76382 0.71 0.405314
Target:  5'- gAGCAGCAUGUUUUCCcauuACCCUGcugauauuUCCCa -3'
miRNA:   3'- -UCGUCGUACGAGAGG----UGGGACc-------GGGG- -5'
28902 3' -60.6 NC_006146.1 + 56957 0.71 0.413743
Target:  5'- cGGCAGCAUaCUCUCaagagACCCUgacGGCCaCCu -3'
miRNA:   3'- -UCGUCGUAcGAGAGg----UGGGA---CCGG-GG- -5'
28902 3' -60.6 NC_006146.1 + 28524 0.71 0.422278
Target:  5'- gGGCAGCAgGCUCaaCACCCcGGaCCUCc -3'
miRNA:   3'- -UCGUCGUaCGAGagGUGGGaCC-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 22368 0.71 0.422278
Target:  5'- gGGCAGCAgGCUCaaCACCCcGGaCCUCc -3'
miRNA:   3'- -UCGUCGUaCGAGagGUGGGaCC-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 19290 0.71 0.422278
Target:  5'- gGGCAGCAgGCUCaaCACCCcGGaCCUCc -3'
miRNA:   3'- -UCGUCGUaCGAGagGUGGGaCC-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 25446 0.71 0.422278
Target:  5'- gGGCAGCAgGCUCaaCACCCcGGaCCUCc -3'
miRNA:   3'- -UCGUCGUaCGAGagGUGGGaCC-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 16212 0.71 0.422278
Target:  5'- gGGCAGCAgGCUCaaCACCCcGGaCCUCc -3'
miRNA:   3'- -UCGUCGUaCGAGagGUGGGaCC-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 13134 0.71 0.422278
Target:  5'- gGGCAGCAgGCUCaaCACCCcGGaCCUCc -3'
miRNA:   3'- -UCGUCGUaCGAGagGUGGGaCC-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 3124 0.71 0.428315
Target:  5'- cGGCAcCGUGCgUCUcgagccaugcgcgcCCACCC-GGCCCCu -3'
miRNA:   3'- -UCGUcGUACG-AGA--------------GGUGGGaCCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.