miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28902 3' -60.6 NC_006146.1 + 22384 1.11 0.000718
Target:  5'- cAGCAGCAUGCUCUCCACCCUGGCCCCg -3'
miRNA:   3'- -UCGUCGUACGAGAGGUGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 43797 0.8 0.113368
Target:  5'- uAGCaucugGGCGUGCcugucccaccgCUCCGCCCUGGCCCUu -3'
miRNA:   3'- -UCG-----UCGUACGa----------GAGGUGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 106480 0.77 0.191481
Target:  5'- uGGCAGCGUaCg--CCGCCgUGGCCCCg -3'
miRNA:   3'- -UCGUCGUAcGagaGGUGGgACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 18365 0.76 0.210915
Target:  5'- uGGUGGCAUGCUC---ACCCUGGUCCUg -3'
miRNA:   3'- -UCGUCGUACGAGaggUGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 87134 0.75 0.243231
Target:  5'- aGGguGCcucUGUUUaCCGCCCUGGCCCUu -3'
miRNA:   3'- -UCguCGu--ACGAGaGGUGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 25224 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 19068 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 12913 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 15990 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 28302 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 22146 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 120609 0.74 0.266992
Target:  5'- cGGCGGCGccUGacagaUCUCCugcGCCCcuUGGCCCCg -3'
miRNA:   3'- -UCGUCGU--ACg----AGAGG---UGGG--ACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 20343 0.74 0.273218
Target:  5'- cAGCAgauccGCGUGUUCUCCugCCUccuggccgcGGCCCa -3'
miRNA:   3'- -UCGU-----CGUACGAGAGGugGGA---------CCGGGg -5'
28902 3' -60.6 NC_006146.1 + 114316 0.74 0.292595
Target:  5'- cGGCGGCggGCUCggCGCCCggccGCCCCu -3'
miRNA:   3'- -UCGUCGuaCGAGagGUGGGac--CGGGG- -5'
28902 3' -60.6 NC_006146.1 + 125345 0.74 0.292595
Target:  5'- cGGCGGaCGUGUcuucccUCcCCugCCUGGCCCUg -3'
miRNA:   3'- -UCGUC-GUACG------AGaGGugGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 67518 0.74 0.299289
Target:  5'- --aAGC-UGCUCUCCACCauuaagaaUGGUCCCa -3'
miRNA:   3'- ucgUCGuACGAGAGGUGGg-------ACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 165249 0.74 0.299289
Target:  5'- cGCGGCugGUGCUCgUCC-CCCUGuCCCCc -3'
miRNA:   3'- uCGUCG--UACGAG-AGGuGGGACcGGGG- -5'
28902 3' -60.6 NC_006146.1 + 158161 0.73 0.313029
Target:  5'- gGGCucAGCGUGCa--CCACCUUGGCCUCc -3'
miRNA:   3'- -UCG--UCGUACGagaGGUGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 36498 0.73 0.313029
Target:  5'- uGGCAcGUGUGCUgCUCCACCCUGGgUUa -3'
miRNA:   3'- -UCGU-CGUACGA-GAGGUGGGACCgGGg -5'
28902 3' -60.6 NC_006146.1 + 113706 0.73 0.327243
Target:  5'- uAGguGCucuugAUGUUCUCCACCagggGGCCCa -3'
miRNA:   3'- -UCguCG-----UACGAGAGGUGGga--CCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.