miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28902 3' -60.6 NC_006146.1 + 50071 0.66 0.738566
Target:  5'- aAGCGGaCGUcCUCUUCGuCCaCggcGGCCCCg -3'
miRNA:   3'- -UCGUC-GUAcGAGAGGU-GG-Ga--CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 34779 0.66 0.72902
Target:  5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3'
miRNA:   3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 34686 0.66 0.72902
Target:  5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3'
miRNA:   3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 34593 0.66 0.72902
Target:  5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3'
miRNA:   3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 34500 0.66 0.72902
Target:  5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3'
miRNA:   3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 34407 0.66 0.72902
Target:  5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3'
miRNA:   3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 34314 0.66 0.72902
Target:  5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3'
miRNA:   3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 34221 0.66 0.72902
Target:  5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3'
miRNA:   3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 34128 0.66 0.72902
Target:  5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3'
miRNA:   3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 34872 0.66 0.72902
Target:  5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3'
miRNA:   3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 34964 0.66 0.72902
Target:  5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3'
miRNA:   3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 35057 0.66 0.72902
Target:  5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3'
miRNA:   3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 83697 0.66 0.738566
Target:  5'- cAGCAGUcuGUGCUgCUgCacagccuguaggACCCUGGCCa- -3'
miRNA:   3'- -UCGUCG--UACGA-GAgG------------UGGGACCGGgg -5'
28902 3' -60.6 NC_006146.1 + 35708 0.66 0.72902
Target:  5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3'
miRNA:   3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 35615 0.66 0.72902
Target:  5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3'
miRNA:   3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 35522 0.66 0.72902
Target:  5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3'
miRNA:   3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 35429 0.66 0.72902
Target:  5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3'
miRNA:   3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 35336 0.66 0.72902
Target:  5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3'
miRNA:   3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 35243 0.66 0.72902
Target:  5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3'
miRNA:   3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 35150 0.66 0.72902
Target:  5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3'
miRNA:   3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.