miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28902 3' -60.6 NC_006146.1 + 247 0.66 0.7097
Target:  5'- -cCGGCcuUGCUCUCuCACUCUugcuacuugcGGCCCUg -3'
miRNA:   3'- ucGUCGu-ACGAGAG-GUGGGA----------CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 664 0.66 0.718429
Target:  5'- cGgAGCAUGCcCgcccgaccccCCGCCCcgggaccccgcgcUGGCCCCc -3'
miRNA:   3'- uCgUCGUACGaGa---------GGUGGG-------------ACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 934 0.66 0.690129
Target:  5'- cGCGcGCcgGC-CUCCcguCCCgaaGGCCCUg -3'
miRNA:   3'- uCGU-CGuaCGaGAGGu--GGGa--CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 1595 0.66 0.718429
Target:  5'- cGgAGCAUGCcCgcccgaccccCCGCCCcgggaccccgcgcUGGCCCCc -3'
miRNA:   3'- uCgUCGUACGaGa---------GGUGGG-------------ACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 1866 0.66 0.690129
Target:  5'- cGCGcGCcgGC-CUCCcguCCCgaaGGCCCUg -3'
miRNA:   3'- uCGU-CGuaCGaGAGGu--GGGa--CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 2527 0.66 0.718429
Target:  5'- cGgAGCAUGCcCgcccgaccccCCGCCCcgggaccccgcgcUGGCCCCc -3'
miRNA:   3'- uCgUCGUACGaGa---------GGUGGG-------------ACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 2798 0.66 0.690129
Target:  5'- cGCGcGCcgGC-CUCCcguCCCgaaGGCCCUg -3'
miRNA:   3'- uCGU-CGuaCGaGAGGu--GGGa--CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 3124 0.71 0.428315
Target:  5'- cGGCAcCGUGCgUCUcgagccaugcgcgcCCACCC-GGCCCCu -3'
miRNA:   3'- -UCGUcGUACG-AGA--------------GGUGGGaCCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 3459 0.66 0.718429
Target:  5'- cGgAGCAUGCcCgcccgaccccCCGCCCcgggaccccgcgcUGGCCCCc -3'
miRNA:   3'- uCgUCGUACGaGa---------GGUGGG-------------ACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 3730 0.66 0.690129
Target:  5'- cGCGcGCcgGC-CUCCcguCCCgaaGGCCCUg -3'
miRNA:   3'- uCGU-CGuaCGaGAGGu--GGGa--CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 3962 0.73 0.327243
Target:  5'- uGCAGCA-GCaCUCC-CCCUGGCUgCa -3'
miRNA:   3'- uCGUCGUaCGaGAGGuGGGACCGGgG- -5'
28902 3' -60.6 NC_006146.1 + 7772 0.67 0.640544
Target:  5'- uGCcuGGuCGUGCUCUgCGCCCuguuUGGUCUCg -3'
miRNA:   3'- uCG--UC-GUACGAGAgGUGGG----ACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 11650 0.72 0.375886
Target:  5'- uGGCGGCGuUGCaccgauauaaugCCAgCCUGGCCCCc -3'
miRNA:   3'- -UCGUCGU-ACGaga---------GGUgGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 12031 0.66 0.719396
Target:  5'- cGGCAGCuacguggcggGUGCgg-CCACCa--GCCCCa -3'
miRNA:   3'- -UCGUCG----------UACGagaGGUGGgacCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 12913 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 13134 0.71 0.422278
Target:  5'- gGGCAGCAgGCUCaaCACCCcGGaCCUCc -3'
miRNA:   3'- -UCGUCGUaCGAGagGUGGGaCC-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 13198 0.68 0.571044
Target:  5'- aAGCAGCG-GCUCaacaacgCCAUCCUgaaGGCCUg -3'
miRNA:   3'- -UCGUCGUaCGAGa------GGUGGGA---CCGGGg -5'
28902 3' -60.6 NC_006146.1 + 15728 0.68 0.589802
Target:  5'- aGGgGGC-UGUUucCUCCGCCCagcaacgUGGCCCUg -3'
miRNA:   3'- -UCgUCGuACGA--GAGGUGGG-------ACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 15990 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 16212 0.71 0.422278
Target:  5'- gGGCAGCAgGCUCaaCACCCcGGaCCUCc -3'
miRNA:   3'- -UCGUCGUaCGAGagGUGGGaCC-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.