miRNA display CGI


Results 1 - 20 of 185 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28902 3' -60.6 NC_006146.1 + 12913 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 115729 0.71 0.405314
Target:  5'- aAGguGaCA-GCg-UCCACCCUGGCCUCc -3'
miRNA:   3'- -UCguC-GUaCGagAGGUGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 16212 0.71 0.422278
Target:  5'- gGGCAGCAgGCUCaaCACCCcGGaCCUCc -3'
miRNA:   3'- -UCGUCGUaCGAGagGUGGGaCC-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 50071 0.66 0.738566
Target:  5'- aAGCGGaCGUcCUCUUCGuCCaCggcGGCCCCg -3'
miRNA:   3'- -UCGUC-GUAcGAGAGGU-GG-Ga--CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 25224 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 28302 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 165249 0.74 0.299289
Target:  5'- cGCGGCugGUGCUCgUCC-CCCUGuCCCCc -3'
miRNA:   3'- uCGUCG--UACGAG-AGGuGGGACcGGGG- -5'
28902 3' -60.6 NC_006146.1 + 158161 0.73 0.313029
Target:  5'- gGGCucAGCGUGCa--CCACCUUGGCCUCc -3'
miRNA:   3'- -UCG--UCGUACGagaGGUGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 109323 0.72 0.357085
Target:  5'- uGCAGCcgGCUCUuccUCAgCgUGGCCCUc -3'
miRNA:   3'- uCGUCGuaCGAGA---GGUgGgACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 76382 0.71 0.405314
Target:  5'- gAGCAGCAUGUUUUCCcauuACCCUGcugauauuUCCCa -3'
miRNA:   3'- -UCGUCGUACGAGAGG----UGGGACc-------GGGG- -5'
28902 3' -60.6 NC_006146.1 + 43387 0.72 0.357085
Target:  5'- gGGCAGCAgcgGCUgcCUCUGCCCcGGCUgCg -3'
miRNA:   3'- -UCGUCGUa--CGA--GAGGUGGGaCCGGgG- -5'
28902 3' -60.6 NC_006146.1 + 153102 0.73 0.341929
Target:  5'- gAGUAGCAcaUGCUCUCggaGCCCgGGaCCCUc -3'
miRNA:   3'- -UCGUCGU--ACGAGAGg--UGGGaCC-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 15990 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 157371 0.72 0.388786
Target:  5'- uGCAGCAgGUUCcugUCCACgCCUcGGCCCa -3'
miRNA:   3'- uCGUCGUaCGAG---AGGUG-GGA-CCGGGg -5'
28902 3' -60.6 NC_006146.1 + 19068 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 47299 0.73 0.341929
Target:  5'- uGCAGCcgGgaCUCCuCCCgGGCCUCc -3'
miRNA:   3'- uCGUCGuaCgaGAGGuGGGaCCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 130302 0.72 0.388786
Target:  5'- cGGCGGCAUGCggagguUCggCCGCCCagGGCCa- -3'
miRNA:   3'- -UCGUCGUACG------AGa-GGUGGGa-CCGGgg -5'
28902 3' -60.6 NC_006146.1 + 13134 0.71 0.422278
Target:  5'- gGGCAGCAgGCUCaaCACCCcGGaCCUCc -3'
miRNA:   3'- -UCGUCGUaCGAGagGUGGGaCC-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 22146 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 125345 0.74 0.292595
Target:  5'- cGGCGGaCGUGUcuucccUCcCCugCCUGGCCCUg -3'
miRNA:   3'- -UCGUC-GUACG------AGaGGugGGACCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.