miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28902 3' -60.6 NC_006146.1 + 165936 0.67 0.630577
Target:  5'- aGGCcGCcaggagGCUCUCguggcCCCUGGUCCCc -3'
miRNA:   3'- -UCGuCGua----CGAGAGgu---GGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 165249 0.74 0.299289
Target:  5'- cGCGGCugGUGCUCgUCC-CCCUGuCCCCc -3'
miRNA:   3'- uCGUCG--UACGAG-AGGuGGGACcGGGG- -5'
28902 3' -60.6 NC_006146.1 + 161952 0.66 0.699942
Target:  5'- uGGCAGCAgGCUaaaCUUC-CCCa-GCCCCa -3'
miRNA:   3'- -UCGUCGUaCGA---GAGGuGGGacCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 160977 0.67 0.644529
Target:  5'- cAGCuGCuccUGCUCgcgggcuccgucgccUCCugCCUGGCCg- -3'
miRNA:   3'- -UCGuCGu--ACGAG---------------AGGugGGACCGGgg -5'
28902 3' -60.6 NC_006146.1 + 158909 0.67 0.640544
Target:  5'- gAGuCAGCGaGCUCUUCugcCCCUGGCagaaCUg -3'
miRNA:   3'- -UC-GUCGUaCGAGAGGu--GGGACCGg---GG- -5'
28902 3' -60.6 NC_006146.1 + 158426 0.69 0.532084
Target:  5'- uGGUAGCA-GCUCUUgA-CCUGGUCCUu -3'
miRNA:   3'- -UCGUCGUaCGAGAGgUgGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 158161 0.73 0.313029
Target:  5'- gGGCucAGCGUGCa--CCACCUUGGCCUCc -3'
miRNA:   3'- -UCG--UCGUACGagaGGUGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 157814 0.67 0.660451
Target:  5'- aGGUccgAGUA--CUcCUCCGCgCUGGCCCCg -3'
miRNA:   3'- -UCG---UCGUacGA-GAGGUGgGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 157749 0.66 0.732849
Target:  5'- -cCGGCAccacgucuaugacguUGCUCUCCucguggGCCCggGaGCCCCc -3'
miRNA:   3'- ucGUCGU---------------ACGAGAGG------UGGGa-C-CGGGG- -5'
28902 3' -60.6 NC_006146.1 + 157580 0.69 0.551459
Target:  5'- cGCGGCcgaCUCcaCCGCCCUGGUgCCCa -3'
miRNA:   3'- uCGUCGuacGAGa-GGUGGGACCG-GGG- -5'
28902 3' -60.6 NC_006146.1 + 157371 0.72 0.388786
Target:  5'- uGCAGCAgGUUCcugUCCACgCCUcGGCCCa -3'
miRNA:   3'- uCGUCGUaCGAG---AGGUG-GGA-CCGGGg -5'
28902 3' -60.6 NC_006146.1 + 155190 0.66 0.719396
Target:  5'- -aCAGCcccCUCUCCucgGCCagUGGCCCCg -3'
miRNA:   3'- ucGUCGuacGAGAGG---UGGg-ACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 153102 0.73 0.341929
Target:  5'- gAGUAGCAcaUGCUCUCggaGCCCgGGaCCCUc -3'
miRNA:   3'- -UCGUCGU--ACGAGAGg--UGGGaCC-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 152390 0.67 0.670376
Target:  5'- uGGgAGUaAUGUUUUgC-CCCUGGCCCUg -3'
miRNA:   3'- -UCgUCG-UACGAGAgGuGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 151464 0.66 0.7097
Target:  5'- aAGCGGCGcGCcgCgUCCACgUUGGCUUCg -3'
miRNA:   3'- -UCGUCGUaCGa-G-AGGUGgGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 151045 0.67 0.650504
Target:  5'- uGUAGCcgGUcacgaUCUCCACgCUgaGGUCCCu -3'
miRNA:   3'- uCGUCGuaCG-----AGAGGUGgGA--CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 145044 0.68 0.571044
Target:  5'- gGGCAGCGUGagcgCgcaGCCCUGGCgCUg -3'
miRNA:   3'- -UCGUCGUACga--GaggUGGGACCGgGG- -5'
28902 3' -60.6 NC_006146.1 + 144862 0.72 0.357085
Target:  5'- uGCAGCG-GCUCUCC-CCCUuuuCCCCu -3'
miRNA:   3'- uCGUCGUaCGAGAGGuGGGAcc-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 144754 0.68 0.600712
Target:  5'- aAGCcccCGUGCUCuuUCCGaCCgGGCCCCg -3'
miRNA:   3'- -UCGuc-GUACGAG--AGGUgGGaCCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 139208 0.67 0.650504
Target:  5'- uGGCAGCc-GCggUCCcccacccuuCCCUGGUCCCu -3'
miRNA:   3'- -UCGUCGuaCGagAGGu--------GGGACCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.