miRNA display CGI


Results 21 - 40 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28902 3' -60.6 NC_006146.1 + 18365 0.76 0.210915
Target:  5'- uGGUGGCAUGCUC---ACCCUGGUCCUg -3'
miRNA:   3'- -UCGUCGUACGAGaggUGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 19068 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 19290 0.71 0.422278
Target:  5'- gGGCAGCAgGCUCaaCACCCcGGaCCUCc -3'
miRNA:   3'- -UCGUCGUaCGAGagGUGGGaCC-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 19595 0.67 0.670376
Target:  5'- aGGaCAGCuccugGCcCUCCuacacgGCCCUGGCCUUc -3'
miRNA:   3'- -UC-GUCGua---CGaGAGG------UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 20343 0.74 0.273218
Target:  5'- cAGCAgauccGCGUGUUCUCCugCCUccuggccgcGGCCCa -3'
miRNA:   3'- -UCGU-----CGUACGAGAGGugGGA---------CCGGGg -5'
28902 3' -60.6 NC_006146.1 + 21049 0.66 0.699942
Target:  5'- gGGCGagacGC-UGCgCUUCGCCgaGGCCCUg -3'
miRNA:   3'- -UCGU----CGuACGaGAGGUGGgaCCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 21306 0.66 0.680271
Target:  5'- aGGCGGCcaGC-CUCCucuCCCgccGCCCCu -3'
miRNA:   3'- -UCGUCGuaCGaGAGGu--GGGac-CGGGG- -5'
28902 3' -60.6 NC_006146.1 + 22146 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 22368 0.71 0.422278
Target:  5'- gGGCAGCAgGCUCaaCACCCcGGaCCUCc -3'
miRNA:   3'- -UCGUCGUaCGAGagGUGGGaCC-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 22384 1.11 0.000718
Target:  5'- cAGCAGCAUGCUCUCCACCCUGGCCCCg -3'
miRNA:   3'- -UCGUCGUACGAGAGGUGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 23175 0.7 0.448505
Target:  5'- cGCGGCccGCUa-UUACCCaGGCCCCg -3'
miRNA:   3'- uCGUCGuaCGAgaGGUGGGaCCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 25224 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 25446 0.71 0.422278
Target:  5'- gGGCAGCAgGCUCaaCACCCcGGaCCUCc -3'
miRNA:   3'- -UCGUCGUaCGAGagGUGGGaCC-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 28302 0.75 0.260276
Target:  5'- uGGUGGUgagccugGUGC-CUCUggagGCCCUGGCCCCg -3'
miRNA:   3'- -UCGUCG-------UACGaGAGG----UGGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 28524 0.71 0.422278
Target:  5'- gGGCAGCAgGCUCaaCACCCcGGaCCUCc -3'
miRNA:   3'- -UCGUCGUaCGAGagGUGGGaCC-GGGG- -5'
28902 3' -60.6 NC_006146.1 + 30679 0.66 0.719396
Target:  5'- -------cGCUgUCCACCCaGGCCCUg -3'
miRNA:   3'- ucgucguaCGAgAGGUGGGaCCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 32872 0.66 0.699942
Target:  5'- gGGCGGCGcgaGgUC-CCugCCUGGCaCCa -3'
miRNA:   3'- -UCGUCGUa--CgAGaGGugGGACCGgGG- -5'
28902 3' -60.6 NC_006146.1 + 33385 0.66 0.72902
Target:  5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3'
miRNA:   3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 33478 0.66 0.72902
Target:  5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3'
miRNA:   3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 33571 0.66 0.72902
Target:  5'- gGGCAGCGgacccagggGCaCcCgGCCCccGGCCCCg -3'
miRNA:   3'- -UCGUCGUa--------CGaGaGgUGGGa-CCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.