miRNA display CGI


Results 41 - 60 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28902 5' -56 NC_006146.1 + 162400 0.67 0.856113
Target:  5'- -cGG-GACCCcGGUGGgCCAGgAUGGu -3'
miRNA:   3'- caCCaCUGGGuCCACC-GGUUgUACUg -5'
28902 5' -56 NC_006146.1 + 87216 0.67 0.851402
Target:  5'- -aGGUGgcggccgcagccaucACCUGGGUGGCCAACccaaagGUGGa -3'
miRNA:   3'- caCCAC---------------UGGGUCCACCGGUUG------UACUg -5'
28902 5' -56 NC_006146.1 + 288 0.67 0.848221
Target:  5'- -cGGgaaGACCCGGG-GGCgGGCccGGCg -3'
miRNA:   3'- caCCa--CUGGGUCCaCCGgUUGuaCUG- -5'
28902 5' -56 NC_006146.1 + 168196 0.67 0.845814
Target:  5'- -gGGgagGGCCCGGGgccgcgcguggggaUGGCCGGCGggaggGGCc -3'
miRNA:   3'- caCCa--CUGGGUCC--------------ACCGGUUGUa----CUG- -5'
28902 5' -56 NC_006146.1 + 167264 0.67 0.845814
Target:  5'- -gGGgagGGCCCGGGgccgcgcguggggaUGGCCGGCGggaggGGCc -3'
miRNA:   3'- caCCa--CUGGGUCC--------------ACCGGUUGUa----CUG- -5'
28902 5' -56 NC_006146.1 + 169128 0.67 0.845814
Target:  5'- -gGGgagGGCCCGGGgccgcgcguggggaUGGCCGGCGggaggGGCc -3'
miRNA:   3'- caCCa--CUGGGUCC--------------ACCGGUUGUa----CUG- -5'
28902 5' -56 NC_006146.1 + 170060 0.67 0.845814
Target:  5'- -gGGgagGGCCCGGGgccgcgcguggggaUGGCCGGCGggaggGGCc -3'
miRNA:   3'- caCCa--CUGGGUCC--------------ACCGGUUGUa----CUG- -5'
28902 5' -56 NC_006146.1 + 67008 0.68 0.840131
Target:  5'- -aGGagaUGGCCCGGGUGaGCC-GCGUGuCc -3'
miRNA:   3'- caCC---ACUGGGUCCAC-CGGuUGUACuG- -5'
28902 5' -56 NC_006146.1 + 138732 0.68 0.83185
Target:  5'- cUGGgGACUCGGGUGGCUGAgcUGAg -3'
miRNA:   3'- cACCaCUGGGUCCACCGGUUguACUg -5'
28902 5' -56 NC_006146.1 + 150666 0.68 0.823387
Target:  5'- -gGGUGGCCgGGGagggguggggagUGGCCAGgGgGACg -3'
miRNA:   3'- caCCACUGGgUCC------------ACCGGUUgUaCUG- -5'
28902 5' -56 NC_006146.1 + 61411 0.68 0.823387
Target:  5'- -aGGcUGGCUgcGGUGGCCAACGcgGGCa -3'
miRNA:   3'- caCC-ACUGGguCCACCGGUUGUa-CUG- -5'
28902 5' -56 NC_006146.1 + 76258 0.68 0.814748
Target:  5'- cGUGGUc-CCCAGGgcGGCCAuCAUGGa -3'
miRNA:   3'- -CACCAcuGGGUCCa-CCGGUuGUACUg -5'
28902 5' -56 NC_006146.1 + 148506 0.68 0.814748
Target:  5'- -cGGUgGACCCcGG-GGCCAGgGUGGa -3'
miRNA:   3'- caCCA-CUGGGuCCaCCGGUUgUACUg -5'
28902 5' -56 NC_006146.1 + 131557 0.68 0.814748
Target:  5'- gGUGG-GACgCCGGGUGGUUug-GUGACu -3'
miRNA:   3'- -CACCaCUG-GGUCCACCGGuugUACUG- -5'
28902 5' -56 NC_006146.1 + 54804 0.68 0.813875
Target:  5'- -cGGgGACCCucGGGUGGCCGccaccauGCAccagGACg -3'
miRNA:   3'- caCCaCUGGG--UCCACCGGU-------UGUa---CUG- -5'
28902 5' -56 NC_006146.1 + 18364 0.68 0.812124
Target:  5'- uUGGUGGCaugcucacccugguCCuGGUGGCCGGgGUGGu -3'
miRNA:   3'- cACCACUG--------------GGuCCACCGGUUgUACUg -5'
28902 5' -56 NC_006146.1 + 140225 0.68 0.805942
Target:  5'- -cGGacagGGCCUGGGUGGaCAGCGuUGACg -3'
miRNA:   3'- caCCa---CUGGGUCCACCgGUUGU-ACUG- -5'
28902 5' -56 NC_006146.1 + 124158 0.68 0.796978
Target:  5'- -aGGcgagGACCC---UGGCCAGCGUGGCc -3'
miRNA:   3'- caCCa---CUGGGuccACCGGUUGUACUG- -5'
28902 5' -56 NC_006146.1 + 78018 0.69 0.791526
Target:  5'- gGUGGUGGCCUAGcagguaccugggcucGUGGCCGAgAaaagGAUg -3'
miRNA:   3'- -CACCACUGGGUC---------------CACCGGUUgUa---CUG- -5'
28902 5' -56 NC_006146.1 + 58259 0.69 0.787863
Target:  5'- -aGG-GGCCC-GGUGGCCuucuGC-UGACa -3'
miRNA:   3'- caCCaCUGGGuCCACCGGu---UGuACUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.