miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28902 5' -56 NC_006146.1 + 70167 0.67 0.878541
Target:  5'- -cGG-GGCgCuGGUGGCCGGCGaGGCc -3'
miRNA:   3'- caCCaCUGgGuCCACCGGUUGUaCUG- -5'
28902 5' -56 NC_006146.1 + 40172 0.67 0.878541
Target:  5'- -cGGcGACCCGGGUGGCaguCuuuUGAg -3'
miRNA:   3'- caCCaCUGGGUCCACCGguuGu--ACUg -5'
28902 5' -56 NC_006146.1 + 125098 0.67 0.878541
Target:  5'- aUGGUGucGCCgGGGUcGGCgguaAACGUGGCc -3'
miRNA:   3'- cACCAC--UGGgUCCA-CCGg---UUGUACUG- -5'
28902 5' -56 NC_006146.1 + 147588 0.67 0.878541
Target:  5'- -gGGUGGCCgGGGagggguggggagUGGCCAGgGagGACg -3'
miRNA:   3'- caCCACUGGgUCC------------ACCGGUUgUa-CUG- -5'
28902 5' -56 NC_006146.1 + 144510 0.67 0.878541
Target:  5'- -gGGUGGCCgGGGagggguggggagUGGCCAGgGagGACg -3'
miRNA:   3'- caCCACUGGgUCC------------ACCGGUUgUa-CUG- -5'
28902 5' -56 NC_006146.1 + 153743 0.67 0.878541
Target:  5'- -gGGUGGCCgGGGagggguggggagUGGCCAGgGagGACg -3'
miRNA:   3'- caCCACUGGgUCC------------ACCGGUUgUa-CUG- -5'
28902 5' -56 NC_006146.1 + 141432 0.67 0.878541
Target:  5'- -gGGUGGCCgGGGagggguggggagUGGCCAGgGagGACg -3'
miRNA:   3'- caCCACUGGgUCC------------ACCGGUUgUa-CUG- -5'
28902 5' -56 NC_006146.1 + 6781 0.67 0.878541
Target:  5'- ---aUGACUgAGGUGGCCAcuCGUGAa -3'
miRNA:   3'- caccACUGGgUCCACCGGUu-GUACUg -5'
28902 5' -56 NC_006146.1 + 156821 0.67 0.878541
Target:  5'- -gGGUGGCCgGGGagggguggggagUGGCCAGgGagGACg -3'
miRNA:   3'- caCCACUGGgUCC------------ACCGGUUgUa-CUG- -5'
28902 5' -56 NC_006146.1 + 114555 0.67 0.877825
Target:  5'- -aGGUcuGGCCCGGGacaaucuUGGUCAGCAUcaGGCu -3'
miRNA:   3'- caCCA--CUGGGUCC-------ACCGGUUGUA--CUG- -5'
28902 5' -56 NC_006146.1 + 6307 0.67 0.871279
Target:  5'- -cGGUuccuGACgCCAGGUGGgCAAUauGUGAUg -3'
miRNA:   3'- caCCA----CUG-GGUCCACCgGUUG--UACUG- -5'
28902 5' -56 NC_006146.1 + 122327 0.67 0.871279
Target:  5'- cUGGcucuUGugCCAGGgGGCCGAgcucagcacCAUGGCu -3'
miRNA:   3'- cACC----ACugGGUCCaCCGGUU---------GUACUG- -5'
28902 5' -56 NC_006146.1 + 51582 0.67 0.871279
Target:  5'- -cGGgaggGGCCCGGGggagccagaggGGCCAGCGUa-- -3'
miRNA:   3'- caCCa---CUGGGUCCa----------CCGGUUGUAcug -5'
28902 5' -56 NC_006146.1 + 155798 0.67 0.863802
Target:  5'- -cGGUGGCCCuGGgGGCCAccgagucaaacAgGUGAg -3'
miRNA:   3'- caCCACUGGGuCCaCCGGU-----------UgUACUg -5'
28902 5' -56 NC_006146.1 + 114351 0.67 0.863802
Target:  5'- -aGGUGGaCgGGGgccUGGCCcGCGUGACg -3'
miRNA:   3'- caCCACUgGgUCC---ACCGGuUGUACUG- -5'
28902 5' -56 NC_006146.1 + 41351 0.67 0.863802
Target:  5'- ---cUGGCCCAGGgccUGGCgGugGUGGCc -3'
miRNA:   3'- caccACUGGGUCC---ACCGgUugUACUG- -5'
28902 5' -56 NC_006146.1 + 120981 0.67 0.863802
Target:  5'- cUGcugGGCCaCAGGUuaucGGCUAACGUGACc -3'
miRNA:   3'- cACca-CUGG-GUCCA----CCGGUUGUACUG- -5'
28902 5' -56 NC_006146.1 + 115346 0.67 0.863802
Target:  5'- -cGGUcAUCgAGGccuuccUGGCCGGCGUGGCg -3'
miRNA:   3'- caCCAcUGGgUCC------ACCGGUUGUACUG- -5'
28902 5' -56 NC_006146.1 + 111279 0.67 0.863802
Target:  5'- uUGGUGACCUuGGUGGac-GCGuUGGCg -3'
miRNA:   3'- cACCACUGGGuCCACCgguUGU-ACUG- -5'
28902 5' -56 NC_006146.1 + 162400 0.67 0.856113
Target:  5'- -cGG-GACCCcGGUGGgCCAGgAUGGu -3'
miRNA:   3'- caCCaCUGGGuCCACC-GGUUgUACUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.