Results 21 - 40 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28902 | 5' | -56 | NC_006146.1 | + | 112194 | 0.67 | 0.856113 |
Target: 5'- cUGGUGGCCUGGGUaguauuguuGGaCAGgGUGGCg -3' miRNA: 3'- cACCACUGGGUCCA---------CCgGUUgUACUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 162400 | 0.67 | 0.856113 |
Target: 5'- -cGG-GACCCcGGUGGgCCAGgAUGGu -3' miRNA: 3'- caCCaCUGGGuCCACC-GGUUgUACUg -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 169128 | 0.67 | 0.845814 |
Target: 5'- -gGGgagGGCCCGGGgccgcgcguggggaUGGCCGGCGggaggGGCc -3' miRNA: 3'- caCCa--CUGGGUCC--------------ACCGGUUGUa----CUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 6307 | 0.67 | 0.871279 |
Target: 5'- -cGGUuccuGACgCCAGGUGGgCAAUauGUGAUg -3' miRNA: 3'- caCCA----CUG-GGUCCACCgGUUG--UACUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 51582 | 0.67 | 0.871279 |
Target: 5'- -cGGgaggGGCCCGGGggagccagaggGGCCAGCGUa-- -3' miRNA: 3'- caCCa---CUGGGUCCa----------CCGGUUGUAcug -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 41351 | 0.67 | 0.863802 |
Target: 5'- ---cUGGCCCAGGgccUGGCgGugGUGGCc -3' miRNA: 3'- caccACUGGGUCC---ACCGgUugUACUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 167264 | 0.67 | 0.845814 |
Target: 5'- -gGGgagGGCCCGGGgccgcgcguggggaUGGCCGGCGggaggGGCc -3' miRNA: 3'- caCCa--CUGGGUCC--------------ACCGGUUGUa----CUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 168196 | 0.67 | 0.845814 |
Target: 5'- -gGGgagGGCCCGGGgccgcgcguggggaUGGCCGGCGggaggGGCc -3' miRNA: 3'- caCCa--CUGGGUCC--------------ACCGGUUGUa----CUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 125098 | 0.67 | 0.878541 |
Target: 5'- aUGGUGucGCCgGGGUcGGCgguaAACGUGGCc -3' miRNA: 3'- cACCAC--UGGgUCCA-CCGg---UUGUACUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 40172 | 0.67 | 0.878541 |
Target: 5'- -cGGcGACCCGGGUGGCaguCuuuUGAg -3' miRNA: 3'- caCCaCUGGGUCCACCGguuGu--ACUg -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 147588 | 0.67 | 0.878541 |
Target: 5'- -gGGUGGCCgGGGagggguggggagUGGCCAGgGagGACg -3' miRNA: 3'- caCCACUGGgUCC------------ACCGGUUgUa-CUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 144510 | 0.67 | 0.878541 |
Target: 5'- -gGGUGGCCgGGGagggguggggagUGGCCAGgGagGACg -3' miRNA: 3'- caCCACUGGgUCC------------ACCGGUUgUa-CUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 141432 | 0.67 | 0.878541 |
Target: 5'- -gGGUGGCCgGGGagggguggggagUGGCCAGgGagGACg -3' miRNA: 3'- caCCACUGGgUCC------------ACCGGUUgUa-CUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 6781 | 0.67 | 0.878541 |
Target: 5'- ---aUGACUgAGGUGGCCAcuCGUGAa -3' miRNA: 3'- caccACUGGgUCCACCGGUu-GUACUg -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 115346 | 0.67 | 0.863802 |
Target: 5'- -cGGUcAUCgAGGccuuccUGGCCGGCGUGGCg -3' miRNA: 3'- caCCAcUGGgUCC------ACCGGUUGUACUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 111279 | 0.67 | 0.863802 |
Target: 5'- uUGGUGACCUuGGUGGac-GCGuUGGCg -3' miRNA: 3'- cACCACUGGGuCCACCgguUGU-ACUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 114351 | 0.67 | 0.863802 |
Target: 5'- -aGGUGGaCgGGGgccUGGCCcGCGUGACg -3' miRNA: 3'- caCCACUgGgUCC---ACCGGuUGUACUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 87216 | 0.67 | 0.851402 |
Target: 5'- -aGGUGgcggccgcagccaucACCUGGGUGGCCAACccaaagGUGGa -3' miRNA: 3'- caCCAC---------------UGGGUCCACCGGUUG------UACUg -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 120981 | 0.67 | 0.863802 |
Target: 5'- cUGcugGGCCaCAGGUuaucGGCUAACGUGACc -3' miRNA: 3'- cACca-CUGG-GUCCA----CCGGUUGUACUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 114555 | 0.67 | 0.877825 |
Target: 5'- -aGGUcuGGCCCGGGacaaucuUGGUCAGCAUcaGGCu -3' miRNA: 3'- caCCA--CUGGGUCC-------ACCGGUUGUA--CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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