miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28902 5' -56 NC_006146.1 + 40172 0.67 0.878541
Target:  5'- -cGGcGACCCGGGUGGCaguCuuuUGAg -3'
miRNA:   3'- caCCaCUGGGUCCACCGguuGu--ACUg -5'
28902 5' -56 NC_006146.1 + 40652 0.66 0.884887
Target:  5'- aUGGUGGCCCGguuccuggagacuGGUGGUgGGCucUGAg -3'
miRNA:   3'- cACCACUGGGU-------------CCACCGgUUGu-ACUg -5'
28902 5' -56 NC_006146.1 + 41351 0.67 0.863802
Target:  5'- ---cUGGCCCAGGgccUGGCgGugGUGGCc -3'
miRNA:   3'- caccACUGGGUCC---ACCGgUugUACUG- -5'
28902 5' -56 NC_006146.1 + 43292 0.71 0.684371
Target:  5'- -cGGUGccGCCCAGGUuagucacucucacccGGCCGGCGcGGCc -3'
miRNA:   3'- caCCAC--UGGGUCCA---------------CCGGUUGUaCUG- -5'
28902 5' -56 NC_006146.1 + 43741 0.69 0.750082
Target:  5'- ----cGGgCCAGGUGGUCGcGCAUGACg -3'
miRNA:   3'- caccaCUgGGUCCACCGGU-UGUACUG- -5'
28902 5' -56 NC_006146.1 + 44562 0.66 0.882792
Target:  5'- -cGG-GGCuCCGGGUGGCUGGCGgaaaugccaggagGACg -3'
miRNA:   3'- caCCaCUG-GGUCCACCGGUUGUa------------CUG- -5'
28902 5' -56 NC_006146.1 + 44708 0.71 0.658844
Target:  5'- -cGGUGGCCguGGcccccgcUGGCCGGCcUGAUg -3'
miRNA:   3'- caCCACUGGguCC-------ACCGGUUGuACUG- -5'
28902 5' -56 NC_006146.1 + 48335 0.75 0.441975
Target:  5'- gGUGGUGGgCCAGGcguccagucUGGCCAGCG-GGCc -3'
miRNA:   3'- -CACCACUgGGUCC---------ACCGGUUGUaCUG- -5'
28902 5' -56 NC_006146.1 + 51582 0.67 0.871279
Target:  5'- -cGGgaggGGCCCGGGggagccagaggGGCCAGCGUa-- -3'
miRNA:   3'- caCCa---CUGGGUCCa----------CCGGUUGUAcug -5'
28902 5' -56 NC_006146.1 + 54804 0.68 0.813875
Target:  5'- -cGGgGACCCucGGGUGGCCGccaccauGCAccagGACg -3'
miRNA:   3'- caCCaCUGGG--UCCACCGGU-------UGUa---CUG- -5'
28902 5' -56 NC_006146.1 + 55063 0.66 0.885581
Target:  5'- -gGGUGGCCaugacGGUGGUCAGgAcgGACg -3'
miRNA:   3'- caCCACUGGgu---CCACCGGUUgUa-CUG- -5'
28902 5' -56 NC_006146.1 + 55380 0.66 0.892395
Target:  5'- -cGGgacGCCCGGGgcaccgaGGCCAGCAUcacGGCg -3'
miRNA:   3'- caCCac-UGGGUCCa------CCGGUUGUA---CUG- -5'
28902 5' -56 NC_006146.1 + 55407 0.71 0.628043
Target:  5'- -cGG-GAcCCCAGGacguaccUGGCUGGCAUGACa -3'
miRNA:   3'- caCCaCU-GGGUCC-------ACCGGUUGUACUG- -5'
28902 5' -56 NC_006146.1 + 56735 0.72 0.594201
Target:  5'- aUGGUGACCCugcugcccagGGCCAGCAUG-Cg -3'
miRNA:   3'- cACCACUGGGucca------CCGGUUGUACuG- -5'
28902 5' -56 NC_006146.1 + 58259 0.69 0.787863
Target:  5'- -aGG-GGCCC-GGUGGCCuucuGC-UGACa -3'
miRNA:   3'- caCCaCUGGGuCCACCGGu---UGuACUG- -5'
28902 5' -56 NC_006146.1 + 58383 0.66 0.911445
Target:  5'- -aGGUGACCCAGGcccuccaccGGCCccug-GACc -3'
miRNA:   3'- caCCACUGGGUCCa--------CCGGuuguaCUG- -5'
28902 5' -56 NC_006146.1 + 59311 0.71 0.649614
Target:  5'- -cGGUGACCUGGcUGGCCGAgAggcUGGCg -3'
miRNA:   3'- caCCACUGGGUCcACCGGUUgU---ACUG- -5'
28902 5' -56 NC_006146.1 + 60480 0.66 0.917321
Target:  5'- -cGGUGAgaggCCGGGgGGCCAGCucccccGACg -3'
miRNA:   3'- caCCACUg---GGUCCaCCGGUUGua----CUG- -5'
28902 5' -56 NC_006146.1 + 61411 0.68 0.823387
Target:  5'- -aGGcUGGCUgcGGUGGCCAACGcgGGCa -3'
miRNA:   3'- caCC-ACUGGguCCACCGGUUGUa-CUG- -5'
28902 5' -56 NC_006146.1 + 62828 0.71 0.680302
Target:  5'- uGUGccuGUGGCCCAGGcUGGCCAuCGaGAUa -3'
miRNA:   3'- -CAC---CACUGGGUCC-ACCGGUuGUaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.