miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28902 5' -56 NC_006146.1 + 288 0.67 0.848221
Target:  5'- -cGGgaaGACCCGGG-GGCgGGCccGGCg -3'
miRNA:   3'- caCCa--CUGGGUCCaCCGgUUGuaCUG- -5'
28902 5' -56 NC_006146.1 + 6307 0.67 0.871279
Target:  5'- -cGGUuccuGACgCCAGGUGGgCAAUauGUGAUg -3'
miRNA:   3'- caCCA----CUG-GGUCCACCgGUUG--UACUG- -5'
28902 5' -56 NC_006146.1 + 6737 0.73 0.527665
Target:  5'- -aGGUGACCCGGGUGauCCGGCA-GAUc -3'
miRNA:   3'- caCCACUGGGUCCACc-GGUUGUaCUG- -5'
28902 5' -56 NC_006146.1 + 6781 0.67 0.878541
Target:  5'- ---aUGACUgAGGUGGCCAcuCGUGAa -3'
miRNA:   3'- caccACUGGgUCCACCGGUu-GUACUg -5'
28902 5' -56 NC_006146.1 + 11428 0.73 0.557636
Target:  5'- -aGGaccaGGCCaAGGUGGCCAAgGUGGCg -3'
miRNA:   3'- caCCa---CUGGgUCCACCGGUUgUACUG- -5'
28902 5' -56 NC_006146.1 + 12417 0.69 0.769219
Target:  5'- -cGGUGgacGCCgAGGUGGUccaguuuaugaaCAGCAUGGCc -3'
miRNA:   3'- caCCAC---UGGgUCCACCG------------GUUGUACUG- -5'
28902 5' -56 NC_006146.1 + 13422 0.69 0.750082
Target:  5'- -gGGUGccucCCCGGGUcccaGGCCAGCcgGAg -3'
miRNA:   3'- caCCACu---GGGUCCA----CCGGUUGuaCUg -5'
28902 5' -56 NC_006146.1 + 15414 0.66 0.89898
Target:  5'- -aGGUGGCCUcagAGG-GGCUGGCccGGCu -3'
miRNA:   3'- caCCACUGGG---UCCaCCGGUUGuaCUG- -5'
28902 5' -56 NC_006146.1 + 16500 0.69 0.750082
Target:  5'- -gGGUGccucCCCGGGUcccaGGCCAGCcgGAg -3'
miRNA:   3'- caCCACu---GGGUCCA----CCGGUUGuaCUg -5'
28902 5' -56 NC_006146.1 + 18364 0.68 0.812124
Target:  5'- uUGGUGGCaugcucacccugguCCuGGUGGCCGGgGUGGu -3'
miRNA:   3'- cACCACUG--------------GGuCCACCGGUUgUACUg -5'
28902 5' -56 NC_006146.1 + 19578 0.69 0.750082
Target:  5'- -gGGUGccucCCCGGGUcccaGGCCAGCcgGAg -3'
miRNA:   3'- caCCACu---GGGUCCA----CCGGUUGuaCUg -5'
28902 5' -56 NC_006146.1 + 20119 0.66 0.89898
Target:  5'- -cGGUGGCCCggcaccugcuGGG-GGCCAAaaaggagGACg -3'
miRNA:   3'- caCCACUGGG----------UCCaCCGGUUgua----CUG- -5'
28902 5' -56 NC_006146.1 + 22420 1.09 0.002656
Target:  5'- cGUGGUGACCCAGGUGGCCAACAUGACu -3'
miRNA:   3'- -CACCACUGGGUCCACCGGUUGUACUG- -5'
28902 5' -56 NC_006146.1 + 22656 0.69 0.750082
Target:  5'- -gGGUGccucCCCGGGUcccaGGCCAGCcgGAg -3'
miRNA:   3'- caCCACu---GGGUCCA----CCGGUUGuaCUg -5'
28902 5' -56 NC_006146.1 + 25734 0.69 0.750082
Target:  5'- -gGGUGccucCCCGGGUcccaGGCCAGCcgGAg -3'
miRNA:   3'- caCCACu---GGGUCCA----CCGGUUGuaCUg -5'
28902 5' -56 NC_006146.1 + 28099 0.66 0.885581
Target:  5'- ----aGGCCCGGGUGgggaauGCUAACAUGAa -3'
miRNA:   3'- caccaCUGGGUCCAC------CGGUUGUACUg -5'
28902 5' -56 NC_006146.1 + 28812 0.69 0.750082
Target:  5'- -gGGUGccucCCCGGGUcccaGGCCAGCcgGAg -3'
miRNA:   3'- caCCACu---GGGUCCA----CCGGUUGuaCUg -5'
28902 5' -56 NC_006146.1 + 30919 0.7 0.700575
Target:  5'- uUGGUGGCCCAGGgggGaGCCcguuuCGUGGg -3'
miRNA:   3'- cACCACUGGGUCCa--C-CGGuu---GUACUg -5'
28902 5' -56 NC_006146.1 + 32049 0.66 0.911445
Target:  5'- -aGGUcauGACCCGGGcgUGGCgAGCAucggucagcUGACc -3'
miRNA:   3'- caCCA---CUGGGUCC--ACCGgUUGU---------ACUG- -5'
28902 5' -56 NC_006146.1 + 37192 0.71 0.659868
Target:  5'- --uGUGGCCCGGGUGGgCAAUGgcUGGCc -3'
miRNA:   3'- cacCACUGGGUCCACCgGUUGU--ACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.