miRNA display CGI


Results 1 - 20 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28902 5' -56 NC_006146.1 + 68744 0.8 0.228574
Target:  5'- gGUGGUGgagGCCCAGGUGGCCAAgcuuCA-GGCg -3'
miRNA:   3'- -CACCAC---UGGGUCCACCGGUU----GUaCUG- -5'
28902 5' -56 NC_006146.1 + 131557 0.68 0.814748
Target:  5'- gGUGG-GACgCCGGGUGGUUug-GUGACu -3'
miRNA:   3'- -CACCaCUG-GGUCCACCGGuugUACUG- -5'
28902 5' -56 NC_006146.1 + 61411 0.68 0.823387
Target:  5'- -aGGcUGGCUgcGGUGGCCAACGcgGGCa -3'
miRNA:   3'- caCC-ACUGGguCCACCGGUUGUa-CUG- -5'
28902 5' -56 NC_006146.1 + 89110 0.66 0.917321
Target:  5'- -cGGcacUGcCCCAGGUGGCacccccggaGACcgGGCg -3'
miRNA:   3'- caCC---ACuGGGUCCACCGg--------UUGuaCUG- -5'
28902 5' -56 NC_006146.1 + 44708 0.71 0.658844
Target:  5'- -cGGUGGCCguGGcccccgcUGGCCGGCcUGAUg -3'
miRNA:   3'- caCCACUGGguCC-------ACCGGUUGuACUG- -5'
28902 5' -56 NC_006146.1 + 37192 0.71 0.659868
Target:  5'- --uGUGGCCCGGGUGGgCAAUGgcUGGCc -3'
miRNA:   3'- cacCACUGGGUCCACCgGUUGU--ACUG- -5'
28902 5' -56 NC_006146.1 + 43292 0.71 0.684371
Target:  5'- -cGGUGccGCCCAGGUuagucacucucacccGGCCGGCGcGGCc -3'
miRNA:   3'- caCCAC--UGGGUCCA---------------CCGGUUGUaCUG- -5'
28902 5' -56 NC_006146.1 + 30919 0.7 0.700575
Target:  5'- uUGGUGGCCCAGGgggGaGCCcguuuCGUGGg -3'
miRNA:   3'- cACCACUGGGUCCa--C-CGGuu---GUACUg -5'
28902 5' -56 NC_006146.1 + 19578 0.69 0.750082
Target:  5'- -gGGUGccucCCCGGGUcccaGGCCAGCcgGAg -3'
miRNA:   3'- caCCACu---GGGUCCA----CCGGUUGuaCUg -5'
28902 5' -56 NC_006146.1 + 160087 0.69 0.786943
Target:  5'- --uGUGGCCCGuguagccGGUGcCCAGCGUGGCg -3'
miRNA:   3'- cacCACUGGGU-------CCACcGGUUGUACUG- -5'
28902 5' -56 NC_006146.1 + 25734 0.69 0.750082
Target:  5'- -gGGUGccucCCCGGGUcccaGGCCAGCcgGAg -3'
miRNA:   3'- caCCACu---GGGUCCA----CCGGUUGuaCUg -5'
28902 5' -56 NC_006146.1 + 16500 0.69 0.750082
Target:  5'- -gGGUGccucCCCGGGUcccaGGCCAGCcgGAg -3'
miRNA:   3'- caCCACu---GGGUCCA----CCGGUUGuaCUg -5'
28902 5' -56 NC_006146.1 + 48335 0.75 0.441975
Target:  5'- gGUGGUGGgCCAGGcguccagucUGGCCAGCG-GGCc -3'
miRNA:   3'- -CACCACUgGGUCC---------ACCGGUUGUaCUG- -5'
28902 5' -56 NC_006146.1 + 28812 0.69 0.750082
Target:  5'- -gGGUGccucCCCGGGUcccaGGCCAGCcgGAg -3'
miRNA:   3'- caCCACu---GGGUCCA----CCGGUUGuaCUg -5'
28902 5' -56 NC_006146.1 + 98986 0.73 0.5516
Target:  5'- -aGGUcaGGCCCAGGUcagaGGCCGcgcgcaggaggguccGCGUGACg -3'
miRNA:   3'- caCCA--CUGGGUCCA----CCGGU---------------UGUACUG- -5'
28902 5' -56 NC_006146.1 + 13422 0.69 0.750082
Target:  5'- -gGGUGccucCCCGGGUcccaGGCCAGCcgGAg -3'
miRNA:   3'- caCCACu---GGGUCCA----CCGGUUGuaCUg -5'
28902 5' -56 NC_006146.1 + 93689 0.69 0.769219
Target:  5'- gGUGGUGGaggcauagUCCAGGaGGCCGugGaGACg -3'
miRNA:   3'- -CACCACU--------GGGUCCaCCGGUugUaCUG- -5'
28902 5' -56 NC_006146.1 + 148506 0.68 0.814748
Target:  5'- -cGGUgGACCCcGG-GGCCAGgGUGGa -3'
miRNA:   3'- caCCA-CUGGGuCCaCCGGUUgUACUg -5'
28902 5' -56 NC_006146.1 + 105764 0.72 0.608536
Target:  5'- -aGGUGugCCAGGaaGGCCucuAUGUGGCu -3'
miRNA:   3'- caCCACugGGUCCa-CCGGu--UGUACUG- -5'
28902 5' -56 NC_006146.1 + 62828 0.71 0.680302
Target:  5'- uGUGccuGUGGCCCAGGcUGGCCAuCGaGAUa -3'
miRNA:   3'- -CAC---CACUGGGUCC-ACCGGUuGUaCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.