Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28902 | 5' | -56 | NC_006146.1 | + | 51582 | 0.67 | 0.871279 |
Target: 5'- -cGGgaggGGCCCGGGggagccagaggGGCCAGCGUa-- -3' miRNA: 3'- caCCa---CUGGGUCCa----------CCGGUUGUAcug -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 40652 | 0.66 | 0.884887 |
Target: 5'- aUGGUGGCCCGguuccuggagacuGGUGGUgGGCucUGAg -3' miRNA: 3'- cACCACUGGGU-------------CCACCGgUUGu-ACUg -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 44562 | 0.66 | 0.882792 |
Target: 5'- -cGG-GGCuCCGGGUGGCUGGCGgaaaugccaggagGACg -3' miRNA: 3'- caCCaCUG-GGUCCACCGGUUGUa------------CUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 6781 | 0.67 | 0.878541 |
Target: 5'- ---aUGACUgAGGUGGCCAcuCGUGAa -3' miRNA: 3'- caccACUGGgUCCACCGGUu-GUACUg -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 156821 | 0.67 | 0.878541 |
Target: 5'- -gGGUGGCCgGGGagggguggggagUGGCCAGgGagGACg -3' miRNA: 3'- caCCACUGGgUCC------------ACCGGUUgUa-CUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 153743 | 0.67 | 0.878541 |
Target: 5'- -gGGUGGCCgGGGagggguggggagUGGCCAGgGagGACg -3' miRNA: 3'- caCCACUGGgUCC------------ACCGGUUgUa-CUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 147588 | 0.67 | 0.878541 |
Target: 5'- -gGGUGGCCgGGGagggguggggagUGGCCAGgGagGACg -3' miRNA: 3'- caCCACUGGgUCC------------ACCGGUUgUa-CUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 144510 | 0.67 | 0.878541 |
Target: 5'- -gGGUGGCCgGGGagggguggggagUGGCCAGgGagGACg -3' miRNA: 3'- caCCACUGGgUCC------------ACCGGUUgUa-CUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 141432 | 0.67 | 0.878541 |
Target: 5'- -gGGUGGCCgGGGagggguggggagUGGCCAGgGagGACg -3' miRNA: 3'- caCCACUGGgUCC------------ACCGGUUgUa-CUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 55063 | 0.66 | 0.885581 |
Target: 5'- -gGGUGGCCaugacGGUGGUCAGgAcgGACg -3' miRNA: 3'- caCCACUGGgu---CCACCGGUUgUa-CUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 167884 | 0.66 | 0.885581 |
Target: 5'- -cGGUGAgguugcUCCAGGgauggaaaGGCCccAGCAUGACc -3' miRNA: 3'- caCCACU------GGGUCCa-------CCGG--UUGUACUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 28099 | 0.66 | 0.885581 |
Target: 5'- ----aGGCCCGGGUGgggaauGCUAACAUGAa -3' miRNA: 3'- caccaCUGGGUCCAC------CGGUUGUACUg -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 128755 | 0.66 | 0.913825 |
Target: 5'- -gGGUGuCCgAGGccuucuucuggagugUGGCCAGCAgGGCc -3' miRNA: 3'- caCCACuGGgUCC---------------ACCGGUUGUaCUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 114807 | 0.66 | 0.911445 |
Target: 5'- cGUGGagGAgCU-GGUGGCCGACAccuacuUGGCc -3' miRNA: 3'- -CACCa-CUgGGuCCACCGGUUGU------ACUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 84380 | 0.66 | 0.911445 |
Target: 5'- cGUGGa---CCGGGcGGCCAuCAUGGCc -3' miRNA: 3'- -CACCacugGGUCCaCCGGUuGUACUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 135879 | 0.66 | 0.911445 |
Target: 5'- -aGGUcauGACCCGGGcgUGGCgAGCAucggucagcUGACc -3' miRNA: 3'- caCCA---CUGGGUCC--ACCGgUUGU---------ACUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 32049 | 0.66 | 0.911445 |
Target: 5'- -aGGUcauGACCCGGGcgUGGCgAGCAucggucagcUGACc -3' miRNA: 3'- caCCA---CUGGGUCC--ACCGgUUGU---------ACUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 128431 | 0.66 | 0.905331 |
Target: 5'- -gGGUGAUCCGGGccGCaGACcgGGCg -3' miRNA: 3'- caCCACUGGGUCCacCGgUUGuaCUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 20119 | 0.66 | 0.89898 |
Target: 5'- -cGGUGGCCCggcaccugcuGGG-GGCCAAaaaggagGACg -3' miRNA: 3'- caCCACUGGG----------UCCaCCGGUUgua----CUG- -5' |
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28902 | 5' | -56 | NC_006146.1 | + | 15414 | 0.66 | 0.89898 |
Target: 5'- -aGGUGGCCUcagAGG-GGCUGGCccGGCu -3' miRNA: 3'- caCCACUGGG---UCCaCCGGUUGuaCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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