miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28902 5' -56 NC_006146.1 + 22420 1.09 0.002656
Target:  5'- cGUGGUGACCCAGGUGGCCAACAUGACu -3'
miRNA:   3'- -CACCACUGGGUCCACCGGUUGUACUG- -5'
28902 5' -56 NC_006146.1 + 68744 0.8 0.228574
Target:  5'- gGUGGUGgagGCCCAGGUGGCCAAgcuuCA-GGCg -3'
miRNA:   3'- -CACCAC---UGGGUCCACCGGUU----GUaCUG- -5'
28902 5' -56 NC_006146.1 + 48335 0.75 0.441975
Target:  5'- gGUGGUGGgCCAGGcguccagucUGGCCAGCG-GGCc -3'
miRNA:   3'- -CACCACUgGGUCC---------ACCGGUUGUaCUG- -5'
28902 5' -56 NC_006146.1 + 6737 0.73 0.527665
Target:  5'- -aGGUGACCCGGGUGauCCGGCA-GAUc -3'
miRNA:   3'- caCCACUGGGUCCACc-GGUUGUaCUG- -5'
28902 5' -56 NC_006146.1 + 98986 0.73 0.5516
Target:  5'- -aGGUcaGGCCCAGGUcagaGGCCGcgcgcaggaggguccGCGUGACg -3'
miRNA:   3'- caCCA--CUGGGUCCA----CCGGU---------------UGUACUG- -5'
28902 5' -56 NC_006146.1 + 11428 0.73 0.557636
Target:  5'- -aGGaccaGGCCaAGGUGGCCAAgGUGGCg -3'
miRNA:   3'- caCCa---CUGGgUCCACCGGUUgUACUG- -5'
28902 5' -56 NC_006146.1 + 56735 0.72 0.594201
Target:  5'- aUGGUGACCCugcugcccagGGCCAGCAUG-Cg -3'
miRNA:   3'- cACCACUGGGucca------CCGGUUGUACuG- -5'
28902 5' -56 NC_006146.1 + 105764 0.72 0.608536
Target:  5'- -aGGUGugCCAGGaaGGCCucuAUGUGGCu -3'
miRNA:   3'- caCCACugGGUCCa-CCGGu--UGUACUG- -5'
28902 5' -56 NC_006146.1 + 55407 0.71 0.628043
Target:  5'- -cGG-GAcCCCAGGacguaccUGGCUGGCAUGACa -3'
miRNA:   3'- caCCaCU-GGGUCC-------ACCGGUUGUACUG- -5'
28902 5' -56 NC_006146.1 + 59311 0.71 0.649614
Target:  5'- -cGGUGACCUGGcUGGCCGAgAggcUGGCg -3'
miRNA:   3'- caCCACUGGGUCcACCGGUUgU---ACUG- -5'
28902 5' -56 NC_006146.1 + 44708 0.71 0.658844
Target:  5'- -cGGUGGCCguGGcccccgcUGGCCGGCcUGAUg -3'
miRNA:   3'- caCCACUGGguCC-------ACCGGUUGuACUG- -5'
28902 5' -56 NC_006146.1 + 37192 0.71 0.659868
Target:  5'- --uGUGGCCCGGGUGGgCAAUGgcUGGCc -3'
miRNA:   3'- cacCACUGGGUCCACCgGUUGU--ACUG- -5'
28902 5' -56 NC_006146.1 + 70273 0.71 0.670101
Target:  5'- -cGGUGAU--GGGgaccacGGCCGACAUGACa -3'
miRNA:   3'- caCCACUGggUCCa-----CCGGUUGUACUG- -5'
28902 5' -56 NC_006146.1 + 62828 0.71 0.680302
Target:  5'- uGUGccuGUGGCCCAGGcUGGCCAuCGaGAUa -3'
miRNA:   3'- -CAC---CACUGGGUCC-ACCGGUuGUaCUG- -5'
28902 5' -56 NC_006146.1 + 43292 0.71 0.684371
Target:  5'- -cGGUGccGCCCAGGUuagucacucucacccGGCCGGCGcGGCc -3'
miRNA:   3'- caCCAC--UGGGUCCA---------------CCGGUUGUaCUG- -5'
28902 5' -56 NC_006146.1 + 30919 0.7 0.700575
Target:  5'- uUGGUGGCCCAGGgggGaGCCcguuuCGUGGg -3'
miRNA:   3'- cACCACUGGGUCCa--C-CGGuu---GUACUg -5'
28902 5' -56 NC_006146.1 + 102894 0.7 0.700575
Target:  5'- -aGGggGACgCCAGG-GGCCGugugGCGUGGCu -3'
miRNA:   3'- caCCa-CUG-GGUCCaCCGGU----UGUACUG- -5'
28902 5' -56 NC_006146.1 + 13422 0.69 0.750082
Target:  5'- -gGGUGccucCCCGGGUcccaGGCCAGCcgGAg -3'
miRNA:   3'- caCCACu---GGGUCCA----CCGGUUGuaCUg -5'
28902 5' -56 NC_006146.1 + 43741 0.69 0.750082
Target:  5'- ----cGGgCCAGGUGGUCGcGCAUGACg -3'
miRNA:   3'- caccaCUgGGUCCACCGGU-UGUACUG- -5'
28902 5' -56 NC_006146.1 + 16500 0.69 0.750082
Target:  5'- -gGGUGccucCCCGGGUcccaGGCCAGCcgGAg -3'
miRNA:   3'- caCCACu---GGGUCCA----CCGGUUGuaCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.