miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28902 5' -56 NC_006146.1 + 22656 0.69 0.750082
Target:  5'- -gGGUGccucCCCGGGUcccaGGCCAGCcgGAg -3'
miRNA:   3'- caCCACu---GGGUCCA----CCGGUUGuaCUg -5'
28902 5' -56 NC_006146.1 + 28812 0.69 0.750082
Target:  5'- -gGGUGccucCCCGGGUcccaGGCCAGCcgGAg -3'
miRNA:   3'- caCCACu---GGGUCCA----CCGGUUGuaCUg -5'
28902 5' -56 NC_006146.1 + 16500 0.69 0.750082
Target:  5'- -gGGUGccucCCCGGGUcccaGGCCAGCcgGAg -3'
miRNA:   3'- caCCACu---GGGUCCA----CCGGUUGuaCUg -5'
28902 5' -56 NC_006146.1 + 19578 0.69 0.750082
Target:  5'- -gGGUGccucCCCGGGUcccaGGCCAGCcgGAg -3'
miRNA:   3'- caCCACu---GGGUCCA----CCGGUUGuaCUg -5'
28902 5' -56 NC_006146.1 + 12417 0.69 0.769219
Target:  5'- -cGGUGgacGCCgAGGUGGUccaguuuaugaaCAGCAUGGCc -3'
miRNA:   3'- caCCAC---UGGgUCCACCG------------GUUGUACUG- -5'
28902 5' -56 NC_006146.1 + 93689 0.69 0.769219
Target:  5'- gGUGGUGGaggcauagUCCAGGaGGCCGugGaGACg -3'
miRNA:   3'- -CACCACU--------GGGUCCaCCGGUugUaCUG- -5'
28902 5' -56 NC_006146.1 + 160087 0.69 0.786943
Target:  5'- --uGUGGCCCGuguagccGGUGcCCAGCGUGGCg -3'
miRNA:   3'- cacCACUGGGU-------CCACcGGUUGUACUG- -5'
28902 5' -56 NC_006146.1 + 137501 0.69 0.786943
Target:  5'- -cGGUG-CCCAGGcgGGCCAccccccacccggaGCggGGCa -3'
miRNA:   3'- caCCACuGGGUCCa-CCGGU-------------UGuaCUG- -5'
28902 5' -56 NC_006146.1 + 58259 0.69 0.787863
Target:  5'- -aGG-GGCCC-GGUGGCCuucuGC-UGACa -3'
miRNA:   3'- caCCaCUGGGuCCACCGGu---UGuACUG- -5'
28902 5' -56 NC_006146.1 + 78018 0.69 0.791526
Target:  5'- gGUGGUGGCCUAGcagguaccugggcucGUGGCCGAgAaaagGAUg -3'
miRNA:   3'- -CACCACUGGGUC---------------CACCGGUUgUa---CUG- -5'
28902 5' -56 NC_006146.1 + 124158 0.68 0.796978
Target:  5'- -aGGcgagGACCC---UGGCCAGCGUGGCc -3'
miRNA:   3'- caCCa---CUGGGuccACCGGUUGUACUG- -5'
28902 5' -56 NC_006146.1 + 140225 0.68 0.805942
Target:  5'- -cGGacagGGCCUGGGUGGaCAGCGuUGACg -3'
miRNA:   3'- caCCa---CUGGGUCCACCgGUUGU-ACUG- -5'
28902 5' -56 NC_006146.1 + 18364 0.68 0.812124
Target:  5'- uUGGUGGCaugcucacccugguCCuGGUGGCCGGgGUGGu -3'
miRNA:   3'- cACCACUG--------------GGuCCACCGGUUgUACUg -5'
28902 5' -56 NC_006146.1 + 54804 0.68 0.813875
Target:  5'- -cGGgGACCCucGGGUGGCCGccaccauGCAccagGACg -3'
miRNA:   3'- caCCaCUGGG--UCCACCGGU-------UGUa---CUG- -5'
28902 5' -56 NC_006146.1 + 76258 0.68 0.814748
Target:  5'- cGUGGUc-CCCAGGgcGGCCAuCAUGGa -3'
miRNA:   3'- -CACCAcuGGGUCCa-CCGGUuGUACUg -5'
28902 5' -56 NC_006146.1 + 148506 0.68 0.814748
Target:  5'- -cGGUgGACCCcGG-GGCCAGgGUGGa -3'
miRNA:   3'- caCCA-CUGGGuCCaCCGGUUgUACUg -5'
28902 5' -56 NC_006146.1 + 131557 0.68 0.814748
Target:  5'- gGUGG-GACgCCGGGUGGUUug-GUGACu -3'
miRNA:   3'- -CACCaCUG-GGUCCACCGGuugUACUG- -5'
28902 5' -56 NC_006146.1 + 61411 0.68 0.823387
Target:  5'- -aGGcUGGCUgcGGUGGCCAACGcgGGCa -3'
miRNA:   3'- caCC-ACUGGguCCACCGGUUGUa-CUG- -5'
28902 5' -56 NC_006146.1 + 150666 0.68 0.823387
Target:  5'- -gGGUGGCCgGGGagggguggggagUGGCCAGgGgGACg -3'
miRNA:   3'- caCCACUGGgUCC------------ACCGGUUgUaCUG- -5'
28902 5' -56 NC_006146.1 + 138732 0.68 0.83185
Target:  5'- cUGGgGACUCGGGUGGCUGAgcUGAg -3'
miRNA:   3'- cACCaCUGGGUCCACCGGUUguACUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.