miRNA display CGI


Results 21 - 40 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28902 5' -56 NC_006146.1 + 168196 0.67 0.845814
Target:  5'- -gGGgagGGCCCGGGgccgcgcguggggaUGGCCGGCGggaggGGCc -3'
miRNA:   3'- caCCa--CUGGGUCC--------------ACCGGUUGUa----CUG- -5'
28902 5' -56 NC_006146.1 + 61411 0.68 0.823387
Target:  5'- -aGGcUGGCUgcGGUGGCCAACGcgGGCa -3'
miRNA:   3'- caCC-ACUGGguCCACCGGUUGUa-CUG- -5'
28902 5' -56 NC_006146.1 + 16500 0.69 0.750082
Target:  5'- -gGGUGccucCCCGGGUcccaGGCCAGCcgGAg -3'
miRNA:   3'- caCCACu---GGGUCCA----CCGGUUGuaCUg -5'
28902 5' -56 NC_006146.1 + 105764 0.72 0.608536
Target:  5'- -aGGUGugCCAGGaaGGCCucuAUGUGGCu -3'
miRNA:   3'- caCCACugGGUCCa-CCGGu--UGUACUG- -5'
28902 5' -56 NC_006146.1 + 125098 0.67 0.878541
Target:  5'- aUGGUGucGCCgGGGUcGGCgguaAACGUGGCc -3'
miRNA:   3'- cACCAC--UGGgUCCA-CCGg---UUGUACUG- -5'
28902 5' -56 NC_006146.1 + 41351 0.67 0.863802
Target:  5'- ---cUGGCCCAGGgccUGGCgGugGUGGCc -3'
miRNA:   3'- caccACUGGGUCC---ACCGgUugUACUG- -5'
28902 5' -56 NC_006146.1 + 131557 0.68 0.814748
Target:  5'- gGUGG-GACgCCGGGUGGUUug-GUGACu -3'
miRNA:   3'- -CACCaCUG-GGUCCACCGGuugUACUG- -5'
28902 5' -56 NC_006146.1 + 98986 0.73 0.5516
Target:  5'- -aGGUcaGGCCCAGGUcagaGGCCGcgcgcaggaggguccGCGUGACg -3'
miRNA:   3'- caCCA--CUGGGUCCA----CCGGU---------------UGUACUG- -5'
28902 5' -56 NC_006146.1 + 162400 0.67 0.856113
Target:  5'- -cGG-GACCCcGGUGGgCCAGgAUGGu -3'
miRNA:   3'- caCCaCUGGGuCCACC-GGUUgUACUg -5'
28902 5' -56 NC_006146.1 + 48335 0.75 0.441975
Target:  5'- gGUGGUGGgCCAGGcguccagucUGGCCAGCG-GGCc -3'
miRNA:   3'- -CACCACUgGGUCC---------ACCGGUUGUaCUG- -5'
28902 5' -56 NC_006146.1 + 148506 0.68 0.814748
Target:  5'- -cGGUgGACCCcGG-GGCCAGgGUGGa -3'
miRNA:   3'- caCCA-CUGGGuCCaCCGGUUgUACUg -5'
28902 5' -56 NC_006146.1 + 169128 0.67 0.845814
Target:  5'- -gGGgagGGCCCGGGgccgcgcguggggaUGGCCGGCGggaggGGCc -3'
miRNA:   3'- caCCa--CUGGGUCC--------------ACCGGUUGUa----CUG- -5'
28902 5' -56 NC_006146.1 + 28812 0.69 0.750082
Target:  5'- -gGGUGccucCCCGGGUcccaGGCCAGCcgGAg -3'
miRNA:   3'- caCCACu---GGGUCCA----CCGGUUGuaCUg -5'
28902 5' -56 NC_006146.1 + 19578 0.69 0.750082
Target:  5'- -gGGUGccucCCCGGGUcccaGGCCAGCcgGAg -3'
miRNA:   3'- caCCACu---GGGUCCA----CCGGUUGuaCUg -5'
28902 5' -56 NC_006146.1 + 43292 0.71 0.684371
Target:  5'- -cGGUGccGCCCAGGUuagucacucucacccGGCCGGCGcGGCc -3'
miRNA:   3'- caCCAC--UGGGUCCA---------------CCGGUUGUaCUG- -5'
28902 5' -56 NC_006146.1 + 44708 0.71 0.658844
Target:  5'- -cGGUGGCCguGGcccccgcUGGCCGGCcUGAUg -3'
miRNA:   3'- caCCACUGGguCC-------ACCGGUUGuACUG- -5'
28902 5' -56 NC_006146.1 + 55380 0.66 0.892395
Target:  5'- -cGGgacGCCCGGGgcaccgaGGCCAGCAUcacGGCg -3'
miRNA:   3'- caCCac-UGGGUCCa------CCGGUUGUA---CUG- -5'
28902 5' -56 NC_006146.1 + 70167 0.67 0.878541
Target:  5'- -cGG-GGCgCuGGUGGCCGGCGaGGCc -3'
miRNA:   3'- caCCaCUGgGuCCACCGGUUGUaCUG- -5'
28902 5' -56 NC_006146.1 + 6307 0.67 0.871279
Target:  5'- -cGGUuccuGACgCCAGGUGGgCAAUauGUGAUg -3'
miRNA:   3'- caCCA----CUG-GGUCCACCgGUUG--UACUG- -5'
28902 5' -56 NC_006146.1 + 120981 0.67 0.863802
Target:  5'- cUGcugGGCCaCAGGUuaucGGCUAACGUGACc -3'
miRNA:   3'- cACca-CUGG-GUCCA----CCGGUUGUACUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.