miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28903 5' -47 NC_006146.1 + 15935 0.66 0.999932
Target:  5'- gGCGCcuGGGCGAGgcuGGGugGcUGGg -3'
miRNA:   3'- gUGCGuuCCCGUUUac-UUCugUuACC- -5'
28903 5' -47 NC_006146.1 + 19012 0.66 0.999932
Target:  5'- gGCGCcuGGGCGAggcuggGUGGcuGGGCAGgccgGGu -3'
miRNA:   3'- gUGCGuuCCCGUU------UACU--UCUGUUa---CC- -5'
28903 5' -47 NC_006146.1 + 19758 0.66 0.999949
Target:  5'- gACGCu-GGGCAccugcGAAGACAuagagGGg -3'
miRNA:   3'- gUGCGuuCCCGUuua--CUUCUGUua---CC- -5'
28903 5' -47 NC_006146.1 + 20318 0.66 0.999932
Target:  5'- -cUGCA--GGCGGGUGcuGGACGAUGGc -3'
miRNA:   3'- guGCGUucCCGUUUACu-UCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 22090 0.66 0.999932
Target:  5'- gGCGCcuGGGCGAggcuggGUGGcuGGGCAGgccgGGu -3'
miRNA:   3'- gUGCGuuCCCGUU------UACU--UCUGUUa---CC- -5'
28903 5' -47 NC_006146.1 + 22244 1.12 0.01582
Target:  5'- aCACGCAAGGGCAAAUGAAGACAAUGGu -3'
miRNA:   3'- -GUGCGUUCCCGUUUACUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 24181 0.72 0.98684
Target:  5'- gCACGUGgacAGGGCAGAgGAGGGC--UGGg -3'
miRNA:   3'- -GUGCGU---UCCCGUUUaCUUCUGuuACC- -5'
28903 5' -47 NC_006146.1 + 25168 0.66 0.999932
Target:  5'- gGCGCcuGGGCGAggcuggGUGGcuGGGCAGgccgGGu -3'
miRNA:   3'- gUGCGuuCCCGUU------UACU--UCUGUUa---CC- -5'
28903 5' -47 NC_006146.1 + 26816 0.72 0.978691
Target:  5'- gGCGUuGGGGCAGuaacGUGggGAgAAUGa -3'
miRNA:   3'- gUGCGuUCCCGUU----UACuuCUgUUACc -5'
28903 5' -47 NC_006146.1 + 28246 0.66 0.999932
Target:  5'- gGCGCcuGGGCGAggcuggGUGGcuGGGCAGgccgGGu -3'
miRNA:   3'- gUGCGuuCCCGUU------UACU--UCUGUUa---CC- -5'
28903 5' -47 NC_006146.1 + 31942 0.69 0.997908
Target:  5'- gAgGCAagcGGGGCGAguaAUGggGGCuuAGUGGc -3'
miRNA:   3'- gUgCGU---UCCCGUU---UACuuCUG--UUACC- -5'
28903 5' -47 NC_006146.1 + 32117 0.68 0.998746
Target:  5'- gCACGCAGGGGUgccacgucaccccgGGGUGcugggguGGGgGAUGGg -3'
miRNA:   3'- -GUGCGUUCCCG--------------UUUACu------UCUgUUACC- -5'
28903 5' -47 NC_006146.1 + 36634 0.75 0.921655
Target:  5'- aACGUAGGGGgAccuguGUGAAGGCGcgGGg -3'
miRNA:   3'- gUGCGUUCCCgUu----UACUUCUGUuaCC- -5'
28903 5' -47 NC_006146.1 + 39546 0.73 0.967298
Target:  5'- gGCGCAAGGGCug--GAuacccguGugAAUGGa -3'
miRNA:   3'- gUGCGUUCCCGuuuaCUu------CugUUACC- -5'
28903 5' -47 NC_006146.1 + 40410 0.66 0.999946
Target:  5'- -cCGCGGGGGCAAAguagccacccggGgcGGCAGcGGc -3'
miRNA:   3'- guGCGUUCCCGUUUa-----------CuuCUGUUaCC- -5'
28903 5' -47 NC_006146.1 + 44347 0.66 0.999883
Target:  5'- uGCaCAGGuGGCuGAUGggGACGA-GGu -3'
miRNA:   3'- gUGcGUUC-CCGuUUACuuCUGUUaCC- -5'
28903 5' -47 NC_006146.1 + 44525 0.69 0.997497
Target:  5'- uCAgGCugacGGGCg---GAGGACGGUGGg -3'
miRNA:   3'- -GUgCGuu--CCCGuuuaCUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 46799 0.75 0.926842
Target:  5'- gGCGCGAGGGCAAAggccucUGGguucuccAGcACGGUGGg -3'
miRNA:   3'- gUGCGUUCCCGUUU------ACU-------UC-UGUUACC- -5'
28903 5' -47 NC_006146.1 + 47062 0.68 0.998818
Target:  5'- -uCGCcggugucggugaGGGGGCGccuGAcGAAGACGGUGGg -3'
miRNA:   3'- guGCG------------UUCCCGU---UUaCUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 49394 0.67 0.999863
Target:  5'- uCGCGCAGGcGGaugUAGGUGggGuucuuggcggcccccACGAUGGa -3'
miRNA:   3'- -GUGCGUUC-CC---GUUUACuuC---------------UGUUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.