miRNA display CGI


Results 1 - 20 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28903 5' -47 NC_006146.1 + 10 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 42 0.66 0.999883
Target:  5'- uUACGCAAGGGUGAuuucGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 74 0.68 0.999492
Target:  5'- uCACGCAAGGGUGAuuucGggGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CuuCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 106 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 138 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 1005 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 1037 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 1069 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 1938 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 1970 0.69 0.998261
Target:  5'- uCACGCAAGGGUGAuuuAGGAgAggGGu -3'
miRNA:   3'- -GUGCGUUCCCGUUuacUUCUgUuaCC- -5'
28903 5' -47 NC_006146.1 + 2001 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 2870 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 2902 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 2934 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 3777 0.7 0.995125
Target:  5'- cUACGCGGGGGgGGggGggGGgGggGGg -3'
miRNA:   3'- -GUGCGUUCCCgUUuaCuuCUgUuaCC- -5'
28903 5' -47 NC_006146.1 + 5831 0.72 0.98684
Target:  5'- gAgGCAAuGG-AGAUGGAGGCAAUGGa -3'
miRNA:   3'- gUgCGUUcCCgUUUACUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 6099 0.72 0.982931
Target:  5'- gACGgAGGaaauggaGGCAAcgGUGGAGGCGGUGGg -3'
miRNA:   3'- gUGCgUUC-------CCGUU--UACUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 6189 0.73 0.975905
Target:  5'- gACGgAggagaugGGGGCGAugGUGAAGACGGUGa -3'
miRNA:   3'- gUGCgU-------UCCCGUU--UACUUCUGUUACc -5'
28903 5' -47 NC_006146.1 + 12797 0.66 0.999911
Target:  5'- -cUGCAGGGGCGGAcGuacGGACGGcGGc -3'
miRNA:   3'- guGCGUUCCCGUUUaCu--UCUGUUaCC- -5'
28903 5' -47 NC_006146.1 + 13311 0.68 0.999492
Target:  5'- cCACGUgcuGGGCAcc--AGGGCGGUGGa -3'
miRNA:   3'- -GUGCGuu-CCCGUuuacUUCUGUUACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.