miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28903 5' -47 NC_006146.1 + 166688 0.79 0.795782
Target:  5'- cCugGCAGGGGgGAGacGGGGCAAUGGg -3'
miRNA:   3'- -GugCGUUCCCgUUUacUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 148042 0.7 0.995844
Target:  5'- gGCGUuGGGGCccaugauGAUGAGGAgGAUGa -3'
miRNA:   3'- gUGCGuUCCCGu------UUACUUCUgUUACc -5'
28903 5' -47 NC_006146.1 + 53747 0.7 0.996473
Target:  5'- uGCGCcGGGGCGAAgacGGGCGGcGGg -3'
miRNA:   3'- gUGCGuUCCCGUUUacuUCUGUUaCC- -5'
28903 5' -47 NC_006146.1 + 58951 0.65 0.999959
Target:  5'- uGCGCuGAGGuGCugcagcccucgagGGAGACGGUGGc -3'
miRNA:   3'- gUGCG-UUCC-CGuuua---------CUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 54029 0.74 0.952149
Target:  5'- gGCGCcuccgGAGGGCGGccAUGucGGCGGUGGu -3'
miRNA:   3'- gUGCG-----UUCCCGUU--UACuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 90083 0.73 0.973435
Target:  5'- -gUGCAGGGGgGAgcaGUGGAGGCAGcGGa -3'
miRNA:   3'- guGCGUUCCCgUU---UACUUCUGUUaCC- -5'
28903 5' -47 NC_006146.1 + 133820 0.72 0.98101
Target:  5'- uGCuCAGGGGaggGGGUGAGGAUggUGGg -3'
miRNA:   3'- gUGcGUUCCCg--UUUACUUCUGuuACC- -5'
28903 5' -47 NC_006146.1 + 58102 0.72 0.983135
Target:  5'- gUACGUggGGcGCAAcgGGAGGCAGg-- -3'
miRNA:   3'- -GUGCGuuCC-CGUUuaCUUCUGUUacc -5'
28903 5' -47 NC_006146.1 + 156287 0.71 0.992349
Target:  5'- cCACGCAgcgccagcAGGGCAcagaGGUGAuguagAGGCGcgGGu -3'
miRNA:   3'- -GUGCGU--------UCCCGU----UUACU-----UCUGUuaCC- -5'
28903 5' -47 NC_006146.1 + 145407 0.7 0.995844
Target:  5'- gGgGUAGGGGUuguAGcgGAAGGCAAUGa -3'
miRNA:   3'- gUgCGUUCCCG---UUuaCUUCUGUUACc -5'
28903 5' -47 NC_006146.1 + 165744 0.7 0.99431
Target:  5'- --aGCGGGGGUcAggGAGGGgGAUGGg -3'
miRNA:   3'- gugCGUUCCCGuUuaCUUCUgUUACC- -5'
28903 5' -47 NC_006146.1 + 166870 0.71 0.992349
Target:  5'- gGCGgGAGGGgGGAgcgGAGGGCGA-GGa -3'
miRNA:   3'- gUGCgUUCCCgUUUa--CUUCUGUUaCC- -5'
28903 5' -47 NC_006146.1 + 46799 0.75 0.926842
Target:  5'- gGCGCGAGGGCAAAggccucUGGguucuccAGcACGGUGGg -3'
miRNA:   3'- gUGCGUUCCCGUUU------ACU-------UC-UGUUACC- -5'
28903 5' -47 NC_006146.1 + 68604 0.7 0.995125
Target:  5'- -gUGCAGguGGGCGAucugcugagaaAUGAgcAGACGAUGGg -3'
miRNA:   3'- guGCGUU--CCCGUU-----------UACU--UCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 125995 0.75 0.938101
Target:  5'- gGCuGCGAGGcuuGgGAGUGggGGCGGUGGg -3'
miRNA:   3'- gUG-CGUUCC---CgUUUACuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 90197 0.72 0.9865
Target:  5'- -gUGCAgGGGGCAGAgggggaagaggaGGAGGCGGUGGa -3'
miRNA:   3'- guGCGU-UCCCGUUUa-----------CUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 125787 0.7 0.995125
Target:  5'- aACGCAGGGGaAGAgGAAGGCAcgcGGa -3'
miRNA:   3'- gUGCGUUCCCgUUUaCUUCUGUua-CC- -5'
28903 5' -47 NC_006146.1 + 161654 0.7 0.996473
Target:  5'- -uUGCuguGGGC---UGggGACAGUGGu -3'
miRNA:   3'- guGCGuu-CCCGuuuACuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 139966 0.75 0.938101
Target:  5'- uCugGCucauGGGCAGGUGuGGGCAgGUGGg -3'
miRNA:   3'- -GugCGuu--CCCGUUUACuUCUGU-UACC- -5'
28903 5' -47 NC_006146.1 + 160416 0.73 0.976169
Target:  5'- uGCGauaGAGGGCGAGguaguGGGCGGUGGc -3'
miRNA:   3'- gUGCg--UUCCCGUUUacu--UCUGUUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.