miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28903 5' -47 NC_006146.1 + 22244 1.12 0.01582
Target:  5'- aCACGCAAGGGCAAAUGAAGACAAUGGu -3'
miRNA:   3'- -GUGCGUUCCCGUUUACUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 59444 0.84 0.564041
Target:  5'- gGCGCAgggcagGGGGCAggacuccccgauGAUGGAGGCAAUGGc -3'
miRNA:   3'- gUGCGU------UCCCGU------------UUACUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 69513 0.81 0.682859
Target:  5'- aAC-CAGGGGCAGaAUGAGGAUGAUGGa -3'
miRNA:   3'- gUGcGUUCCCGUU-UACUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 166688 0.79 0.795782
Target:  5'- cCugGCAGGGGgGAGacGGGGCAAUGGg -3'
miRNA:   3'- -GugCGUUCCCgUUUacUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 61815 0.78 0.823696
Target:  5'- --aGCAacauuaGGGGCGcuGGUGggGGCAGUGGg -3'
miRNA:   3'- gugCGU------UCCCGU--UUACuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 100251 0.77 0.881586
Target:  5'- gCugGCGGGGuGUGAgcggcucugGUGggGGCAAUGGg -3'
miRNA:   3'- -GugCGUUCC-CGUU---------UACuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 36634 0.75 0.921655
Target:  5'- aACGUAGGGGgAccuguGUGAAGGCGcgGGg -3'
miRNA:   3'- gUGCGUUCCCgUu----UACUUCUGUuaCC- -5'
28903 5' -47 NC_006146.1 + 92644 0.75 0.921655
Target:  5'- aACGCAGGGaGCAGcucuuGUGGccauuggacgGGGCAGUGGg -3'
miRNA:   3'- gUGCGUUCC-CGUU-----UACU----------UCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 46799 0.75 0.926842
Target:  5'- gGCGCGAGGGCAAAggccucUGGguucuccAGcACGGUGGg -3'
miRNA:   3'- gUGCGUUCCCGUUU------ACU-------UC-UGUUACC- -5'
28903 5' -47 NC_006146.1 + 125995 0.75 0.938101
Target:  5'- gGCuGCGAGGcuuGgGAGUGggGGCGGUGGg -3'
miRNA:   3'- gUG-CGUUCC---CgUUUACuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 139966 0.75 0.938101
Target:  5'- uCugGCucauGGGCAGGUGuGGGCAgGUGGg -3'
miRNA:   3'- -GugCGuu--CCCGUUUACuUCUGU-UACC- -5'
28903 5' -47 NC_006146.1 + 54029 0.74 0.952149
Target:  5'- gGCGCcuccgGAGGGCGGccAUGucGGCGGUGGu -3'
miRNA:   3'- gUGCG-----UUCCCGUU--UACuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 167756 0.74 0.960219
Target:  5'- gGCGCAGGGGCcGGGUGGGcGCGcAUGGc -3'
miRNA:   3'- gUGCGUUCCCG-UUUACUUcUGU-UACC- -5'
28903 5' -47 NC_006146.1 + 61667 0.73 0.967298
Target:  5'- aACGCAGGaGGUGGAgagagGggGGCAcgGGu -3'
miRNA:   3'- gUGCGUUC-CCGUUUa----CuuCUGUuaCC- -5'
28903 5' -47 NC_006146.1 + 128084 0.73 0.967298
Target:  5'- uCAUGCAggugcgggaGGGGCcGAggcaGggGACAAUGGc -3'
miRNA:   3'- -GUGCGU---------UCCCGuUUa---CuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 167864 0.73 0.967298
Target:  5'- gGCGUAGGGGCAcg-GAGGuGCGGUGa -3'
miRNA:   3'- gUGCGUUCCCGUuuaCUUC-UGUUACc -5'
28903 5' -47 NC_006146.1 + 39546 0.73 0.967298
Target:  5'- gGCGCAAGGGCug--GAuacccguGugAAUGGa -3'
miRNA:   3'- gUGCGUUCCCGuuuaCUu------CugUUACC- -5'
28903 5' -47 NC_006146.1 + 146736 0.73 0.973435
Target:  5'- gGCGC-AGGGCA-----AGGCGAUGGg -3'
miRNA:   3'- gUGCGuUCCCGUuuacuUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 143659 0.73 0.973435
Target:  5'- gGCGC-AGGGCA-----AGGCGAUGGg -3'
miRNA:   3'- gUGCGuUCCCGUuuacuUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 155970 0.73 0.973435
Target:  5'- gGCGC-AGGGCA-----AGGCGAUGGg -3'
miRNA:   3'- gUGCGuUCCCGUuuacuUCUGUUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.