miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28903 5' -47 NC_006146.1 + 58951 0.65 0.999959
Target:  5'- uGCGCuGAGGuGCugcagcccucgagGGAGACGGUGGc -3'
miRNA:   3'- gUGCG-UUCC-CGuuua---------CUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 12797 0.66 0.999911
Target:  5'- -cUGCAGGGGCGGAcGuacGGACGGcGGc -3'
miRNA:   3'- guGCGUUCCCGUUUaCu--UCUGUUaCC- -5'
28903 5' -47 NC_006146.1 + 111344 0.66 0.999883
Target:  5'- gGCGCAAcccgagguGGGCAucagGgcGACAAacUGGg -3'
miRNA:   3'- gUGCGUU--------CCCGUuua-CuuCUGUU--ACC- -5'
28903 5' -47 NC_006146.1 + 71653 0.66 0.999883
Target:  5'- gGCgGCGAGGGaaggaaGAAgcccGAGACGGUGGu -3'
miRNA:   3'- gUG-CGUUCCCg-----UUUac--UUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 42 0.66 0.999883
Target:  5'- uUACGCAAGGGUGAuuucGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 141201 0.66 0.999883
Target:  5'- aUAC-CAGGGGCuccuGGgggGAacuGGGCAGUGGa -3'
miRNA:   3'- -GUGcGUUCCCGu---UUa--CU---UCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 44347 0.66 0.999883
Target:  5'- uGCaCAGGuGGCuGAUGggGACGA-GGu -3'
miRNA:   3'- gUGcGUUC-CCGuUUACuuCUGUUaCC- -5'
28903 5' -47 NC_006146.1 + 167497 0.66 0.999911
Target:  5'- cCugGCGGGGG-AGA-GggGGCAGggcUGGc -3'
miRNA:   3'- -GugCGUUCCCgUUUaCuuCUGUU---ACC- -5'
28903 5' -47 NC_006146.1 + 168429 0.66 0.999911
Target:  5'- cCugGCGGGGG-AGA-GggGGCAGggcUGGc -3'
miRNA:   3'- -GugCGUUCCCgUUUaCuuCUGUU---ACC- -5'
28903 5' -47 NC_006146.1 + 126652 0.66 0.999911
Target:  5'- -cCGCAGGGGCAAu---GGACAc--- -3'
miRNA:   3'- guGCGUUCCCGUUuacuUCUGUuacc -5'
28903 5' -47 NC_006146.1 + 52406 0.66 0.999911
Target:  5'- gUACGUggGGGCc-GUcAAGACcGUGGc -3'
miRNA:   3'- -GUGCGuuCCCGuuUAcUUCUGuUACC- -5'
28903 5' -47 NC_006146.1 + 64344 0.66 0.999911
Target:  5'- --aGCAuuGGGCAAuauaaauuacUGGAGugGAUGGu -3'
miRNA:   3'- gugCGUu-CCCGUUu---------ACUUCugUUACC- -5'
28903 5' -47 NC_006146.1 + 19758 0.66 0.999949
Target:  5'- gACGCu-GGGCAccugcGAAGACAuagagGGg -3'
miRNA:   3'- gUGCGuuCCCGUuua--CUUCUGUua---CC- -5'
28903 5' -47 NC_006146.1 + 165382 0.66 0.999949
Target:  5'- gGCGcCAGGGGUcAGUGcgauGACuAUGGa -3'
miRNA:   3'- gUGC-GUUCCCGuUUACuu--CUGuUACC- -5'
28903 5' -47 NC_006146.1 + 40410 0.66 0.999946
Target:  5'- -cCGCGGGGGCAAAguagccacccggGgcGGCAGcGGc -3'
miRNA:   3'- guGCGUUCCCGUUUa-----------CuuCUGUUaCC- -5'
28903 5' -47 NC_006146.1 + 116797 0.66 0.999932
Target:  5'- gACGCucAAGGGCGuggugGAGGGCGuccaGGa -3'
miRNA:   3'- gUGCG--UUCCCGUuua--CUUCUGUua--CC- -5'
28903 5' -47 NC_006146.1 + 20318 0.66 0.999932
Target:  5'- -cUGCA--GGCGGGUGcuGGACGAUGGc -3'
miRNA:   3'- guGCGUucCCGUUUACu-UCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 116349 0.66 0.999911
Target:  5'- gGCG-AAGGGaCGGAaGGAGGCGAgagGGg -3'
miRNA:   3'- gUGCgUUCCC-GUUUaCUUCUGUUa--CC- -5'
28903 5' -47 NC_006146.1 + 122615 0.66 0.999911
Target:  5'- gGCG-AGGGGCGGA-GGAGGCcg-GGg -3'
miRNA:   3'- gUGCgUUCCCGUUUaCUUCUGuuaCC- -5'
28903 5' -47 NC_006146.1 + 88145 0.66 0.999911
Target:  5'- gGCGCAaaGGGGCuucacGAGGuguagauaACAAUGGc -3'
miRNA:   3'- gUGCGU--UCCCGuuua-CUUC--------UGUUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.