Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28907 | 3' | -58.1 | NC_006146.1 | + | 102838 | 0.7 | 0.583609 |
Target: 5'- gACUCCAccccccuguuGGCAGCCAGGGcagccgccaccugGUCGUg-- -3' miRNA: 3'- gUGAGGU----------CCGUCGGUCCC-------------UAGCGuac -5' |
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28907 | 3' | -58.1 | NC_006146.1 | + | 105861 | 0.68 | 0.73505 |
Target: 5'- aGCUCgAGGaAGCCGGGGAg-GCAa- -3' miRNA: 3'- gUGAGgUCCgUCGGUCCCUagCGUac -5' |
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28907 | 3' | -58.1 | NC_006146.1 | + | 108414 | 0.67 | 0.744701 |
Target: 5'- cCugUCCGucugacguGGCGGCCAGGuGGaCGCAg- -3' miRNA: 3'- -GugAGGU--------CCGUCGGUCC-CUaGCGUac -5' |
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28907 | 3' | -58.1 | NC_006146.1 | + | 114567 | 0.67 | 0.754256 |
Target: 5'- uGCUCCGGGCGGCCuccuucUCGCGg- -3' miRNA: 3'- gUGAGGUCCGUCGGucccu-AGCGUac -5' |
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28907 | 3' | -58.1 | NC_006146.1 | + | 116041 | 0.69 | 0.685656 |
Target: 5'- -cCUCCAcGGCccgcuGCUGGGGAUggCGCAUGa -3' miRNA: 3'- guGAGGU-CCGu----CGGUCCCUA--GCGUAC- -5' |
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28907 | 3' | -58.1 | NC_006146.1 | + | 123365 | 0.66 | 0.809057 |
Target: 5'- aGCUCUGGcGCuGGCCGGGGGcccCGCAa- -3' miRNA: 3'- gUGAGGUC-CG-UCGGUCCCUa--GCGUac -5' |
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28907 | 3' | -58.1 | NC_006146.1 | + | 125172 | 0.67 | 0.782251 |
Target: 5'- gACUCUGGGCcaGGUCAGGG-UCGUg-- -3' miRNA: 3'- gUGAGGUCCG--UCGGUCCCuAGCGuac -5' |
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28907 | 3' | -58.1 | NC_006146.1 | + | 128403 | 0.67 | 0.790428 |
Target: 5'- gCAgUCCAGGCagaacacGGCCAGGGGa-GgGUGa -3' miRNA: 3'- -GUgAGGUCCG-------UCGGUCCCUagCgUAC- -5' |
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28907 | 3' | -58.1 | NC_006146.1 | + | 128966 | 0.66 | 0.812529 |
Target: 5'- gCGCUCCacGGGCcucggguucugccucAGCaaggGGGGGUCGCAg- -3' miRNA: 3'- -GUGAGG--UCCG---------------UCGg---UCCCUAGCGUac -5' |
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28907 | 3' | -58.1 | NC_006146.1 | + | 131488 | 0.75 | 0.341312 |
Target: 5'- gGgUCUGGGguGCCAGGGAUCGaCcgGg -3' miRNA: 3'- gUgAGGUCCguCGGUCCCUAGC-GuaC- -5' |
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28907 | 3' | -58.1 | NC_006146.1 | + | 138084 | 0.67 | 0.79133 |
Target: 5'- gACgCCGGGcCGGCUGGGGGUUGUg-- -3' miRNA: 3'- gUGaGGUCC-GUCGGUCCCUAGCGuac -5' |
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28907 | 3' | -58.1 | NC_006146.1 | + | 149825 | 0.7 | 0.592669 |
Target: 5'- gGCUCCgggugguguGGGCGGCCAGGGccucggcgaagCGCAg- -3' miRNA: 3'- gUGAGG---------UCCGUCGGUCCCua---------GCGUac -5' |
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28907 | 3' | -58.1 | NC_006146.1 | + | 149957 | 0.66 | 0.84256 |
Target: 5'- gCGC-CCAGGCguugggagugggGGCCAGGGccUGCAg- -3' miRNA: 3'- -GUGaGGUCCG------------UCGGUCCCuaGCGUac -5' |
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28907 | 3' | -58.1 | NC_006146.1 | + | 153300 | 0.69 | 0.645303 |
Target: 5'- uGCUCCAGGCA-CCAGGcccgggccaGGUCGCc-- -3' miRNA: 3'- gUGAGGUCCGUcGGUCC---------CUAGCGuac -5' |
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28907 | 3' | -58.1 | NC_006146.1 | + | 156682 | 0.67 | 0.79133 |
Target: 5'- -gUUUgGGGCGGCUGGGGGUCGgGcUGg -3' miRNA: 3'- guGAGgUCCGUCGGUCCCUAGCgU-AC- -5' |
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28907 | 3' | -58.1 | NC_006146.1 | + | 167884 | 0.67 | 0.773039 |
Target: 5'- aGCcCCgGGGCGGcCCGGGGAcccUCGCGg- -3' miRNA: 3'- gUGaGG-UCCGUC-GGUCCCU---AGCGUac -5' |
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28907 | 3' | -58.1 | NC_006146.1 | + | 168816 | 0.67 | 0.773039 |
Target: 5'- aGCcCCgGGGCGGcCCGGGGAcccUCGCGg- -3' miRNA: 3'- gUGaGG-UCCGUC-GGUCCCU---AGCGUac -5' |
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28907 | 3' | -58.1 | NC_006146.1 | + | 169748 | 0.67 | 0.773039 |
Target: 5'- aGCcCCgGGGCGGcCCGGGGAcccUCGCGg- -3' miRNA: 3'- gUGaGG-UCCGUC-GGUCCCU---AGCGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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