miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28907 3' -58.1 NC_006146.1 + 47604 0.76 0.284597
Target:  5'- cCACUCgGcGGCcGCCAGGGAUCGCc-- -3'
miRNA:   3'- -GUGAGgU-CCGuCGGUCCCUAGCGuac -5'
28907 3' -58.1 NC_006146.1 + 131488 0.75 0.341312
Target:  5'- gGgUCUGGGguGCCAGGGAUCGaCcgGg -3'
miRNA:   3'- gUgAGGUCCguCGGUCCCUAGC-GuaC- -5'
28907 3' -58.1 NC_006146.1 + 33343 0.74 0.36459
Target:  5'- uGCUCCgGGGCAGCCGGGuGGcCGCcgGu -3'
miRNA:   3'- gUGAGG-UCCGUCGGUCC-CUaGCGuaC- -5'
28907 3' -58.1 NC_006146.1 + 33221 0.74 0.380707
Target:  5'- uGCUCCgGGGCAGCCGGGuGGcCGCcgGc -3'
miRNA:   3'- gUGAGG-UCCGUCGGUCC-CUaGCGuaC- -5'
28907 3' -58.1 NC_006146.1 + 102838 0.7 0.583609
Target:  5'- gACUCCAccccccuguuGGCAGCCAGGGcagccgccaccugGUCGUg-- -3'
miRNA:   3'- gUGAGGU----------CCGUCGGUCCC-------------UAGCGuac -5'
28907 3' -58.1 NC_006146.1 + 149825 0.7 0.592669
Target:  5'- gGCUCCgggugguguGGGCGGCCAGGGccucggcgaagCGCAg- -3'
miRNA:   3'- gUGAGG---------UCCGUCGGUCCCua---------GCGUac -5'
28907 3' -58.1 NC_006146.1 + 52700 0.7 0.625033
Target:  5'- aGCUCCGGGCgggaGGUCAGGGggCgGCcgGc -3'
miRNA:   3'- gUGAGGUCCG----UCGGUCCCuaG-CGuaC- -5'
28907 3' -58.1 NC_006146.1 + 128966 0.66 0.812529
Target:  5'- gCGCUCCacGGGCcucggguucugccucAGCaaggGGGGGUCGCAg- -3'
miRNA:   3'- -GUGAGG--UCCG---------------UCGg---UCCCUAGCGUac -5'
28907 3' -58.1 NC_006146.1 + 123365 0.66 0.809057
Target:  5'- aGCUCUGGcGCuGGCCGGGGGcccCGCAa- -3'
miRNA:   3'- gUGAGGUC-CG-UCGGUCCCUa--GCGUac -5'
28907 3' -58.1 NC_006146.1 + 156682 0.67 0.79133
Target:  5'- -gUUUgGGGCGGCUGGGGGUCGgGcUGg -3'
miRNA:   3'- guGAGgUCCGUCGGUCCCUAGCgU-AC- -5'
28907 3' -58.1 NC_006146.1 + 128403 0.67 0.790428
Target:  5'- gCAgUCCAGGCagaacacGGCCAGGGGa-GgGUGa -3'
miRNA:   3'- -GUgAGGUCCG-------UCGGUCCCUagCgUAC- -5'
28907 3' -58.1 NC_006146.1 + 125172 0.67 0.782251
Target:  5'- gACUCUGGGCcaGGUCAGGG-UCGUg-- -3'
miRNA:   3'- gUGAGGUCCG--UCGGUCCCuAGCGuac -5'
28907 3' -58.1 NC_006146.1 + 114567 0.67 0.754256
Target:  5'- uGCUCCGGGCGGCCuccuucUCGCGg- -3'
miRNA:   3'- gUGAGGUCCGUCGGucccu-AGCGUac -5'
28907 3' -58.1 NC_006146.1 + 105861 0.68 0.73505
Target:  5'- aGCUCgAGGaAGCCGGGGAg-GCAa- -3'
miRNA:   3'- gUGAGgUCCgUCGGUCCCUagCGUac -5'
28907 3' -58.1 NC_006146.1 + 77930 0.71 0.5154
Target:  5'- -cCUCgCAGGU-GCCGGGGGUCGCuguuUGg -3'
miRNA:   3'- guGAG-GUCCGuCGGUCCCUAGCGu---AC- -5'
28907 3' -58.1 NC_006146.1 + 51637 0.72 0.481088
Target:  5'- uGCUCCAGGCucuggacucccagggGGCCAGGGccggUGCcgGg -3'
miRNA:   3'- gUGAGGUCCG---------------UCGGUCCCua--GCGuaC- -5'
28907 3' -58.1 NC_006146.1 + 18642 1.07 0.002548
Target:  5'- gCACUCCAGGCAGCCAGGGAUCGCAUGc -3'
miRNA:   3'- -GUGAGGUCCGUCGGUCCCUAGCGUAC- -5'
28907 3' -58.1 NC_006146.1 + 78824 0.66 0.825316
Target:  5'- aCGCgUCCAGGCAGCCguguccgGGGGAgagaacuccgGCAg- -3'
miRNA:   3'- -GUG-AGGUCCGUCGG-------UCCCUag--------CGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.