miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28907 5' -54.5 NC_006146.1 + 4379 0.68 0.917295
Target:  5'- cCGCGGGCuccccaggccGACGCcaugaagauUAUCuuccggACGGUCCAGGg -3'
miRNA:   3'- -GCGUCCG----------CUGCG---------AUAG------UGCUAGGUCU- -5'
28907 5' -54.5 NC_006146.1 + 10986 0.71 0.750908
Target:  5'- aGCAGGCGGCGCUG-C-CGGUgaCGGGg -3'
miRNA:   3'- gCGUCCGCUGCGAUaGuGCUAg-GUCU- -5'
28907 5' -54.5 NC_006146.1 + 18677 1.09 0.004765
Target:  5'- uCGCAGGCGACGCUAUCACGAUCCAGAu -3'
miRNA:   3'- -GCGUCCGCUGCGAUAGUGCUAGGUCU- -5'
28907 5' -54.5 NC_006146.1 + 27347 0.66 0.959292
Target:  5'- aGCGGGUGGCGCgg-CAaGG-CCGGGg -3'
miRNA:   3'- gCGUCCGCUGCGauaGUgCUaGGUCU- -5'
28907 5' -54.5 NC_006146.1 + 32869 0.71 0.75953
Target:  5'- aGCGGGCGGCGCgagGUCccugccuggcaccAgGGUCCGGc -3'
miRNA:   3'- gCGUCCGCUGCGa--UAG-------------UgCUAGGUCu -5'
28907 5' -54.5 NC_006146.1 + 40569 0.66 0.947403
Target:  5'- uGCGGGgGACGCUGaugaGGUCCuGGc -3'
miRNA:   3'- gCGUCCgCUGCGAUagugCUAGGuCU- -5'
28907 5' -54.5 NC_006146.1 + 40847 0.79 0.361987
Target:  5'- gGCAGGgGGCGCUcuuggaggcccggcUCGCGGUCCGGAg -3'
miRNA:   3'- gCGUCCgCUGCGAu-------------AGUGCUAGGUCU- -5'
28907 5' -54.5 NC_006146.1 + 42779 0.69 0.848526
Target:  5'- uGCAGGCGGCGCguggcCGCcucggCCAGGu -3'
miRNA:   3'- gCGUCCGCUGCGaua--GUGcua--GGUCU- -5'
28907 5' -54.5 NC_006146.1 + 44747 0.68 0.917295
Target:  5'- cCGCGGGCGGCugugGUUGUCGgGGcCCGGc -3'
miRNA:   3'- -GCGUCCGCUG----CGAUAGUgCUaGGUCu -5'
28907 5' -54.5 NC_006146.1 + 49495 0.66 0.959293
Target:  5'- gGCcagGGGCGGCGUggcAUCugGAucggcgggugaUCCGGGg -3'
miRNA:   3'- gCG---UCCGCUGCGa--UAGugCU-----------AGGUCU- -5'
28907 5' -54.5 NC_006146.1 + 50428 0.67 0.928284
Target:  5'- gGCAGGCaGGcCGCaagcuUCGCGG-CCAGAu -3'
miRNA:   3'- gCGUCCG-CU-GCGau---AGUGCUaGGUCU- -5'
28907 5' -54.5 NC_006146.1 + 53862 0.68 0.909642
Target:  5'- gGUAGGCGACGCUGgcccUCagcgcccccguaggGCGuagcccagGUCCAGGg -3'
miRNA:   3'- gCGUCCGCUGCGAU----AG--------------UGC--------UAGGUCU- -5'
28907 5' -54.5 NC_006146.1 + 56537 0.66 0.955557
Target:  5'- aGCAGcUGACGC-GUCACGcgggCCAGGc -3'
miRNA:   3'- gCGUCcGCUGCGaUAGUGCua--GGUCU- -5'
28907 5' -54.5 NC_006146.1 + 57300 0.67 0.93342
Target:  5'- gGCAGGCGACGgaGagacUgGCGAcCCGGc -3'
miRNA:   3'- gCGUCCGCUGCgaU----AgUGCUaGGUCu -5'
28907 5' -54.5 NC_006146.1 + 57486 0.73 0.671324
Target:  5'- cCGCGGGCGAUGCcagAUCAUGAauaUCUuaAGAa -3'
miRNA:   3'- -GCGUCCGCUGCGa--UAGUGCU---AGG--UCU- -5'
28907 5' -54.5 NC_006146.1 + 60679 0.67 0.938317
Target:  5'- aGguGGCGGCuGCcGUCACccugCCGGAg -3'
miRNA:   3'- gCguCCGCUG-CGaUAGUGcua-GGUCU- -5'
28907 5' -54.5 NC_006146.1 + 62665 0.67 0.93342
Target:  5'- uGCcGaGCGACGCcucCACGAaCCAGAu -3'
miRNA:   3'- gCGuC-CGCUGCGauaGUGCUaGGUCU- -5'
28907 5' -54.5 NC_006146.1 + 64277 0.66 0.962807
Target:  5'- aGCAGGCGcUGCggcaAUCGCGggUguGAg -3'
miRNA:   3'- gCGUCCGCuGCGa---UAGUGCuaGguCU- -5'
28907 5' -54.5 NC_006146.1 + 68071 0.66 0.950775
Target:  5'- aGCGGcGCGagcaaGCGCagagcccccgCGCGAUCCAGGu -3'
miRNA:   3'- gCGUC-CGC-----UGCGaua-------GUGCUAGGUCU- -5'
28907 5' -54.5 NC_006146.1 + 77932 0.68 0.905355
Target:  5'- uCGCAGGUGccggggguCGCUGUUugGucugggCCGGAg -3'
miRNA:   3'- -GCGUCCGCu-------GCGAUAGugCua----GGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.