miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28907 5' -54.5 NC_006146.1 + 170595 0.67 0.942978
Target:  5'- aGCuGGGCGugGCga--GCGcgCCGGGc -3'
miRNA:   3'- gCG-UCCGCugCGauagUGCuaGGUCU- -5'
28907 5' -54.5 NC_006146.1 + 165162 0.67 0.942978
Target:  5'- gGguGGCuGCGCUugaGCGA-CCAGAg -3'
miRNA:   3'- gCguCCGcUGCGAuagUGCUaGGUCU- -5'
28907 5' -54.5 NC_006146.1 + 160454 0.68 0.899033
Target:  5'- aCGaAGGCGGCGCUcUCGUGGucaUCCAGGu -3'
miRNA:   3'- -GCgUCCGCUGCGAuAGUGCU---AGGUCU- -5'
28907 5' -54.5 NC_006146.1 + 159391 0.75 0.529444
Target:  5'- uCGCAGGCcGCGCUGUCcACGAUCa--- -3'
miRNA:   3'- -GCGUCCGcUGCGAUAG-UGCUAGgucu -5'
28907 5' -54.5 NC_006146.1 + 157036 0.69 0.864026
Target:  5'- uGCGGGgGACGCUGgcaCAcCGGgccgCCGGGg -3'
miRNA:   3'- gCGUCCgCUGCGAUa--GU-GCUa---GGUCU- -5'
28907 5' -54.5 NC_006146.1 + 156928 0.66 0.966104
Target:  5'- gGguGGCGGCGCUG--ACGGgcUCCGc- -3'
miRNA:   3'- gCguCCGCUGCGAUagUGCU--AGGUcu -5'
28907 5' -54.5 NC_006146.1 + 154678 0.69 0.856378
Target:  5'- gGCGGGgGGCGCUGcugCugGGUggucugcgcCCAGAu -3'
miRNA:   3'- gCGUCCgCUGCGAUa--GugCUA---------GGUCU- -5'
28907 5' -54.5 NC_006146.1 + 153958 0.69 0.864026
Target:  5'- uGCGGGgGACGCUGgcaCAcCGGgccgCCGGGg -3'
miRNA:   3'- gCGUCCgCUGCGAUa--GU-GCUa---GGUCU- -5'
28907 5' -54.5 NC_006146.1 + 153425 0.7 0.832242
Target:  5'- gGCGGGUGugGCUGgcUUugGAggggCCGGu -3'
miRNA:   3'- gCGUCCGCugCGAU--AGugCUa---GGUCu -5'
28907 5' -54.5 NC_006146.1 + 150880 0.69 0.864026
Target:  5'- uGCGGGgGACGCUGgcaCAcCGGgccgCCGGGg -3'
miRNA:   3'- gCGUCCgCUGCGAUa--GU-GCUa---GGUCU- -5'
28907 5' -54.5 NC_006146.1 + 147802 0.69 0.864026
Target:  5'- uGCGGGgGACGCUGgcaCAcCGGgccgCCGGGg -3'
miRNA:   3'- gCGUCCgCUGCGAUa--GU-GCUa---GGUCU- -5'
28907 5' -54.5 NC_006146.1 + 144724 0.69 0.864026
Target:  5'- uGCGGGgGACGCUGgcaCAcCGGgccgCCGGGg -3'
miRNA:   3'- gCGUCCgCUGCGAUa--GU-GCUa---GGUCU- -5'
28907 5' -54.5 NC_006146.1 + 141647 0.69 0.864026
Target:  5'- uGCGGGgGACGCUGgcaCAcCGGgccgCCGGGg -3'
miRNA:   3'- gCGUCCgCUGCGAUa--GU-GCUa---GGUCU- -5'
28907 5' -54.5 NC_006146.1 + 136699 0.71 0.750908
Target:  5'- aGCGGGCGGCGCgagGUCccugccuggcccAgGGUCCGGc -3'
miRNA:   3'- gCGUCCGCUGCGa--UAG------------UgCUAGGUCu -5'
28907 5' -54.5 NC_006146.1 + 130829 0.71 0.797556
Target:  5'- uGCAGGCccuccgccgggaGACGCUGUCcuACGGacacgCCGGAg -3'
miRNA:   3'- gCGUCCG------------CUGCGAUAG--UGCUa----GGUCU- -5'
28907 5' -54.5 NC_006146.1 + 129007 0.69 0.878692
Target:  5'- cCGcCAGGCaGACGCgacUCA-GGUCCGGGg -3'
miRNA:   3'- -GC-GUCCG-CUGCGau-AGUgCUAGGUCU- -5'
28907 5' -54.5 NC_006146.1 + 128165 0.74 0.599824
Target:  5'- cCGCAGGCGAUGCa---GCGAcgCCGGGa -3'
miRNA:   3'- -GCGUCCGCUGCGauagUGCUa-GGUCU- -5'
28907 5' -54.5 NC_006146.1 + 125209 0.66 0.951595
Target:  5'- aGguGGCGGuCGUg--CAgGAUCCAGc -3'
miRNA:   3'- gCguCCGCU-GCGauaGUgCUAGGUCu -5'
28907 5' -54.5 NC_006146.1 + 120691 0.7 0.840479
Target:  5'- uCGCGGGUgcacgggcgGACGCUGgagcagCACcuGAUCCGGGa -3'
miRNA:   3'- -GCGUCCG---------CUGCGAUa-----GUG--CUAGGUCU- -5'
28907 5' -54.5 NC_006146.1 + 118245 0.71 0.769003
Target:  5'- aGgGGGCGAgGCUGgacgcccUCAUGcgCCAGAg -3'
miRNA:   3'- gCgUCCGCUgCGAU-------AGUGCuaGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.