miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28907 5' -54.5 NC_006146.1 + 27347 0.66 0.959292
Target:  5'- aGCGGGUGGCGCgg-CAaGG-CCGGGg -3'
miRNA:   3'- gCGUCCGCUGCGauaGUgCUaGGUCU- -5'
28907 5' -54.5 NC_006146.1 + 144724 0.69 0.864026
Target:  5'- uGCGGGgGACGCUGgcaCAcCGGgccgCCGGGg -3'
miRNA:   3'- gCGUCCgCUGCGAUa--GU-GCUa---GGUCU- -5'
28907 5' -54.5 NC_006146.1 + 141647 0.69 0.864026
Target:  5'- uGCGGGgGACGCUGgcaCAcCGGgccgCCGGGg -3'
miRNA:   3'- gCGUCCgCUGCGAUa--GU-GCUa---GGUCU- -5'
28907 5' -54.5 NC_006146.1 + 42779 0.69 0.848526
Target:  5'- uGCAGGCGGCGCguggcCGCcucggCCAGGu -3'
miRNA:   3'- gCGUCCGCUGCGaua--GUGcua--GGUCU- -5'
28907 5' -54.5 NC_006146.1 + 118245 0.71 0.769003
Target:  5'- aGgGGGCGAgGCUGgacgcccUCAUGcgCCAGAg -3'
miRNA:   3'- gCgUCCGCUgCGAU-------AGUGCuaGGUCU- -5'
28907 5' -54.5 NC_006146.1 + 32869 0.71 0.75953
Target:  5'- aGCGGGCGGCGCgagGUCccugccuggcaccAgGGUCCGGc -3'
miRNA:   3'- gCGUCCGCUGCGa--UAG-------------UgCUAGGUCu -5'
28907 5' -54.5 NC_006146.1 + 136699 0.71 0.750908
Target:  5'- aGCGGGCGGCGCgagGUCccugccuggcccAgGGUCCGGc -3'
miRNA:   3'- gCGUCCGCUGCGa--UAG------------UgCUAGGUCu -5'
28907 5' -54.5 NC_006146.1 + 40847 0.79 0.361987
Target:  5'- gGCAGGgGGCGCUcuuggaggcccggcUCGCGGUCCGGAg -3'
miRNA:   3'- gCGUCCgCUGCGAu-------------AGUGCUAGGUCU- -5'
28907 5' -54.5 NC_006146.1 + 18677 1.09 0.004765
Target:  5'- uCGCAGGCGACGCUAUCACGAUCCAGAu -3'
miRNA:   3'- -GCGUCCGCUGCGAUAGUGCUAGGUCU- -5'
28907 5' -54.5 NC_006146.1 + 147802 0.69 0.864026
Target:  5'- uGCGGGgGACGCUGgcaCAcCGGgccgCCGGGg -3'
miRNA:   3'- gCGUCCgCUGCGAUa--GU-GCUa---GGUCU- -5'
28907 5' -54.5 NC_006146.1 + 150880 0.69 0.864026
Target:  5'- uGCGGGgGACGCUGgcaCAcCGGgccgCCGGGg -3'
miRNA:   3'- gCGUCCgCUGCGAUa--GU-GCUa---GGUCU- -5'
28907 5' -54.5 NC_006146.1 + 40569 0.66 0.947403
Target:  5'- uGCGGGgGACGCUGaugaGGUCCuGGc -3'
miRNA:   3'- gCGUCCgCUGCGAUagugCUAGGuCU- -5'
28907 5' -54.5 NC_006146.1 + 165162 0.67 0.942978
Target:  5'- gGguGGCuGCGCUugaGCGA-CCAGAg -3'
miRNA:   3'- gCguCCGcUGCGAuagUGCUaGGUCU- -5'
28907 5' -54.5 NC_006146.1 + 62665 0.67 0.93342
Target:  5'- uGCcGaGCGACGCcucCACGAaCCAGAu -3'
miRNA:   3'- gCGuC-CGCUGCGauaGUGCUaGGUCU- -5'
28907 5' -54.5 NC_006146.1 + 57300 0.67 0.93342
Target:  5'- gGCAGGCGACGgaGagacUgGCGAcCCGGc -3'
miRNA:   3'- gCGUCCGCUGCgaU----AgUGCUaGGUCu -5'
28907 5' -54.5 NC_006146.1 + 110224 0.68 0.917295
Target:  5'- gGCAgGGUGACGgcagccgccaccUUGUCACGAagCCAGGa -3'
miRNA:   3'- gCGU-CCGCUGC------------GAUAGUGCUa-GGUCU- -5'
28907 5' -54.5 NC_006146.1 + 77932 0.68 0.905355
Target:  5'- uCGCAGGUGccggggguCGCUGUUugGucugggCCGGAg -3'
miRNA:   3'- -GCGUCCGCu-------GCGAUAGugCua----GGUCU- -5'
28907 5' -54.5 NC_006146.1 + 157036 0.69 0.864026
Target:  5'- uGCGGGgGACGCUGgcaCAcCGGgccgCCGGGg -3'
miRNA:   3'- gCGUCCgCUGCGAUa--GU-GCUa---GGUCU- -5'
28907 5' -54.5 NC_006146.1 + 153958 0.69 0.864026
Target:  5'- uGCGGGgGACGCUGgcaCAcCGGgccgCCGGGg -3'
miRNA:   3'- gCGUCCgCUGCGAUa--GU-GCUa---GGUCU- -5'
28907 5' -54.5 NC_006146.1 + 156928 0.66 0.966104
Target:  5'- gGguGGCGGCGCUG--ACGGgcUCCGc- -3'
miRNA:   3'- gCguCCGCUGCGAUagUGCU--AGGUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.