miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2891 3' -47.3 NC_001493.1 + 45877 0.72 0.970438
Target:  5'- gCGAGAUGUgCGGGc-UGCGcGAGGCGg -3'
miRNA:   3'- -GCUUUAUAgGCCCuuACGC-UUUCGCg -5'
2891 3' -47.3 NC_001493.1 + 9925 0.71 0.978686
Target:  5'- gCGGAG-AUCCGGGucUGaaGGGAGCGCc -3'
miRNA:   3'- -GCUUUaUAGGCCCuuACg-CUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 125479 0.71 0.978686
Target:  5'- gCGGAG-AUCCGGGucUGaaGGGAGCGCc -3'
miRNA:   3'- -GCUUUaUAGGCCCuuACg-CUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 54354 0.71 0.983147
Target:  5'- uGAGAUGUUCGGGu-UGCuGGAGGCu- -3'
miRNA:   3'- gCUUUAUAGGCCCuuACG-CUUUCGcg -5'
2891 3' -47.3 NC_001493.1 + 38400 0.7 0.988467
Target:  5'- -------aCCGGGAGgagcaCGAAGGCGCg -3'
miRNA:   3'- gcuuuauaGGCCCUUac---GCUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 51463 0.69 0.99342
Target:  5'- uGAAG-AUCgGGGcgaGCGGGAGCGUg -3'
miRNA:   3'- gCUUUaUAGgCCCuuaCGCUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 24873 0.69 0.994342
Target:  5'- --uGGUGUCCGGGGAaGgGAcGGaCGCg -3'
miRNA:   3'- gcuUUAUAGGCCCUUaCgCUuUC-GCG- -5'
2891 3' -47.3 NC_001493.1 + 59447 0.68 0.998581
Target:  5'- aCGggGUAgcaaCCGGGucucCGAAuGCGCu -3'
miRNA:   3'- -GCuuUAUa---GGCCCuuacGCUUuCGCG- -5'
2891 3' -47.3 NC_001493.1 + 19618 0.68 0.998282
Target:  5'- gCGAAAUA-CCGGGGccGUcuuGAGCGUc -3'
miRNA:   3'- -GCUUUAUaGGCCCUuaCGcu-UUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 130545 0.68 0.998282
Target:  5'- uCGAGc---UCGGGggUGCGAucgAGGcCGCg -3'
miRNA:   3'- -GCUUuauaGGCCCuuACGCU---UUC-GCG- -5'
2891 3' -47.3 NC_001493.1 + 14990 0.68 0.998282
Target:  5'- uCGAGc---UCGGGggUGCGAucgAGGcCGCg -3'
miRNA:   3'- -GCUUuauaGGCCCuuACGCU---UUC-GCG- -5'
2891 3' -47.3 NC_001493.1 + 36206 0.68 0.997048
Target:  5'- gCGAGGguUGUaCCGGGGcggccugcGCGggGGUGCu -3'
miRNA:   3'- -GCUUU--AUA-GGCCCUua------CGCuuUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 89234 0.69 0.99673
Target:  5'- -aAGAUGUacaGGGggUGCGAccgagaugggagcccGAGCGUg -3'
miRNA:   3'- gcUUUAUAgg-CCCuuACGCU---------------UUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 64274 0.69 0.996135
Target:  5'- -------cCCGGGggUGgGAgucucguugguguacGAGCGCa -3'
miRNA:   3'- gcuuuauaGGCCCuuACgCU---------------UUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 128467 0.74 0.921318
Target:  5'- gGGAAgGUUCGGGAGUGgGGgucucgguggaGAGCGCc -3'
miRNA:   3'- gCUUUaUAGGCCCUUACgCU-----------UUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 15124 0.77 0.840476
Target:  5'- aCGAGGUcGUCCaGGAGcgguaGCGGGAGCGCu -3'
miRNA:   3'- -GCUUUA-UAGGcCCUUa----CGCUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 130678 0.77 0.840476
Target:  5'- aCGAGGUcGUCCaGGAGcgguaGCGGGAGCGCu -3'
miRNA:   3'- -GCUUUA-UAGGcCCUUa----CGCUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 69785 0.8 0.681102
Target:  5'- -uGAAUGUCaCGGGGAUGgGGAAGCGg -3'
miRNA:   3'- gcUUUAUAG-GCCCUUACgCUUUCGCg -5'
2891 3' -47.3 NC_001493.1 + 15319 1.15 0.008593
Target:  5'- cCGAAAUAUCCGGGAAUGCGAAAGCGCg -3'
miRNA:   3'- -GCUUUAUAGGCCCUUACGCUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 28467 0.66 0.999742
Target:  5'- aCGAGAaaaacaaaucCCGGGAc-GCGgAGAGCGCc -3'
miRNA:   3'- -GCUUUaua-------GGCCCUuaCGC-UUUCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.