miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2891 3' -47.3 NC_001493.1 + 20898 0.67 0.999049
Target:  5'- gGGGAUccCCGGuGccGCGGGAGCGUa -3'
miRNA:   3'- gCUUUAuaGGCCcUuaCGCUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 14990 0.68 0.998282
Target:  5'- uCGAGc---UCGGGggUGCGAucgAGGcCGCg -3'
miRNA:   3'- -GCUUuauaGGCCCuuACGCU---UUC-GCG- -5'
2891 3' -47.3 NC_001493.1 + 130545 0.68 0.998282
Target:  5'- uCGAGc---UCGGGggUGCGAucgAGGcCGCg -3'
miRNA:   3'- -GCUUuauaGGCCCuuACGCU---UUC-GCG- -5'
2891 3' -47.3 NC_001493.1 + 19618 0.68 0.998282
Target:  5'- gCGAAAUA-CCGGGGccGUcuuGAGCGUc -3'
miRNA:   3'- -GCUUUAUaGGCCCUuaCGcu-UUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 59447 0.68 0.998581
Target:  5'- aCGggGUAgcaaCCGGGucucCGAAuGCGCu -3'
miRNA:   3'- -GCuuUAUa---GGCCCuuacGCUUuCGCG- -5'
2891 3' -47.3 NC_001493.1 + 73735 0.68 0.998581
Target:  5'- gGAAGUuacaCGaGGAGUGCGguGGCGa -3'
miRNA:   3'- gCUUUAuag-GC-CCUUACGCuuUCGCg -5'
2891 3' -47.3 NC_001493.1 + 14679 0.67 0.998835
Target:  5'- gGGAGUGUCCc-GAGUGCGGcuccGGGgGCg -3'
miRNA:   3'- gCUUUAUAGGccCUUACGCU----UUCgCG- -5'
2891 3' -47.3 NC_001493.1 + 130233 0.67 0.998835
Target:  5'- gGGAGUGUCCc-GAGUGCGGcuccGGGgGCg -3'
miRNA:   3'- gCUUUAUAGGccCUUACGCU----UUCgCG- -5'
2891 3' -47.3 NC_001493.1 + 19585 0.67 0.999049
Target:  5'- gGGGAUccCCGGuGccGCGGGAGCGUa -3'
miRNA:   3'- gCUUUAuaGGCCcUuaCGCUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 36206 0.68 0.997048
Target:  5'- gCGAGGguUGUaCCGGGGcggccugcGCGggGGUGCu -3'
miRNA:   3'- -GCUUU--AUA-GGCCCUua------CGCuuUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 89234 0.69 0.99673
Target:  5'- -aAGAUGUacaGGGggUGCGAccgagaugggagcccGAGCGUg -3'
miRNA:   3'- gcUUUAUAgg-CCCuuACGCU---------------UUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 64274 0.69 0.996135
Target:  5'- -------cCCGGGggUGgGAgucucguugguguacGAGCGCa -3'
miRNA:   3'- gcuuuauaGGCCCuuACgCU---------------UUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 109180 0.73 0.960123
Target:  5'- gCGAuGGUAUggagcCCGGGAGaGCGcgGGCGCg -3'
miRNA:   3'- -GCU-UUAUA-----GGCCCUUaCGCuuUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 45877 0.72 0.970438
Target:  5'- gCGAGAUGUgCGGGc-UGCGcGAGGCGg -3'
miRNA:   3'- -GCUUUAUAgGCCCuuACGC-UUUCGCg -5'
2891 3' -47.3 NC_001493.1 + 9925 0.71 0.978686
Target:  5'- gCGGAG-AUCCGGGucUGaaGGGAGCGCc -3'
miRNA:   3'- -GCUUUaUAGGCCCuuACg-CUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 125479 0.71 0.978686
Target:  5'- gCGGAG-AUCCGGGucUGaaGGGAGCGCc -3'
miRNA:   3'- -GCUUUaUAGGCCCuuACg-CUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 54354 0.71 0.983147
Target:  5'- uGAGAUGUUCGGGu-UGCuGGAGGCu- -3'
miRNA:   3'- gCUUUAUAGGCCCuuACG-CUUUCGcg -5'
2891 3' -47.3 NC_001493.1 + 38400 0.7 0.988467
Target:  5'- -------aCCGGGAGgagcaCGAAGGCGCg -3'
miRNA:   3'- gcuuuauaGGCCCUUac---GCUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 51463 0.69 0.99342
Target:  5'- uGAAG-AUCgGGGcgaGCGGGAGCGUg -3'
miRNA:   3'- gCUUUaUAGgCCCuuaCGCUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 24873 0.69 0.994342
Target:  5'- --uGGUGUCCGGGGAaGgGAcGGaCGCg -3'
miRNA:   3'- gcuUUAUAGGCCCUUaCgCUuUC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.