miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2891 3' -47.3 NC_001493.1 + 1412 0.73 0.952005
Target:  5'- uGAAAaGUCCaccGGGAcUGCGAAAGUGa -3'
miRNA:   3'- gCUUUaUAGG---CCCUuACGCUUUCGCg -5'
2891 3' -47.3 NC_001493.1 + 3832 0.66 0.999687
Target:  5'- -------cCCGGGcAUGaCGAGAGCGg -3'
miRNA:   3'- gcuuuauaGGCCCuUAC-GCUUUCGCg -5'
2891 3' -47.3 NC_001493.1 + 4729 0.66 0.999604
Target:  5'- ---cGUGUUCGGGuuUGggcacaccCGggGGCGCg -3'
miRNA:   3'- gcuuUAUAGGCCCuuAC--------GCuuUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 9925 0.71 0.978686
Target:  5'- gCGGAG-AUCCGGGucUGaaGGGAGCGCc -3'
miRNA:   3'- -GCUUUaUAGGCCCuuACg-CUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 10818 0.69 0.99342
Target:  5'- uCGAAc---CCGGGGAgcucgcGCGAucGGGCGCg -3'
miRNA:   3'- -GCUUuauaGGCCCUUa-----CGCU--UUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 12913 0.74 0.921318
Target:  5'- gGGAAgGUUCGGGAGUGgGGgucucgguggaGAGCGCc -3'
miRNA:   3'- gCUUUaUAGGCCCUUACgCU-----------UUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 14679 0.67 0.998835
Target:  5'- gGGAGUGUCCc-GAGUGCGGcuccGGGgGCg -3'
miRNA:   3'- gCUUUAUAGGccCUUACGCU----UUCgCG- -5'
2891 3' -47.3 NC_001493.1 + 14990 0.68 0.998282
Target:  5'- uCGAGc---UCGGGggUGCGAucgAGGcCGCg -3'
miRNA:   3'- -GCUUuauaGGCCCuuACGCU---UUC-GCG- -5'
2891 3' -47.3 NC_001493.1 + 15124 0.77 0.840476
Target:  5'- aCGAGGUcGUCCaGGAGcgguaGCGGGAGCGCu -3'
miRNA:   3'- -GCUUUA-UAGGcCCUUa----CGCUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 15319 1.15 0.008593
Target:  5'- cCGAAAUAUCCGGGAAUGCGAAAGCGCg -3'
miRNA:   3'- -GCUUUAUAGGCCCUUACGCUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 16138 0.66 0.999604
Target:  5'- uGAGGUAccuggucauUCCGGGGuu-UGAuGGCGCg -3'
miRNA:   3'- gCUUUAU---------AGGCCCUuacGCUuUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 16338 0.69 0.994342
Target:  5'- aGGAAgGUCuCGGuGAGUGCGggGaaggucuccGCGCc -3'
miRNA:   3'- gCUUUaUAG-GCC-CUUACGCuuU---------CGCG- -5'
2891 3' -47.3 NC_001493.1 + 19585 0.67 0.999049
Target:  5'- gGGGAUccCCGGuGccGCGGGAGCGUa -3'
miRNA:   3'- gCUUUAuaGGCCcUuaCGCUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 19618 0.68 0.998282
Target:  5'- gCGAAAUA-CCGGGGccGUcuuGAGCGUc -3'
miRNA:   3'- -GCUUUAUaGGCCCUuaCGcu-UUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 20467 0.67 0.999229
Target:  5'- uCGucGUGUUCGGGAGgguugcagGCGggGGUuccggGCa -3'
miRNA:   3'- -GCuuUAUAGGCCCUUa-------CGCuuUCG-----CG- -5'
2891 3' -47.3 NC_001493.1 + 20898 0.67 0.999049
Target:  5'- gGGGAUccCCGGuGccGCGGGAGCGUa -3'
miRNA:   3'- gCUUUAuaGGCCcUuaCGCUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 24873 0.69 0.994342
Target:  5'- --uGGUGUCCGGGGAaGgGAcGGaCGCg -3'
miRNA:   3'- gcuUUAUAGGCCCUUaCgCUuUC-GCG- -5'
2891 3' -47.3 NC_001493.1 + 28467 0.66 0.999742
Target:  5'- aCGAGAaaaacaaaucCCGGGAc-GCGgAGAGCGCc -3'
miRNA:   3'- -GCUUUaua-------GGCCCUuaCGC-UUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 28702 0.67 0.999229
Target:  5'- gCGGAAc--UCGGGcGUGUGA-AGCGCa -3'
miRNA:   3'- -GCUUUauaGGCCCuUACGCUuUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 36206 0.68 0.997048
Target:  5'- gCGAGGguUGUaCCGGGGcggccugcGCGggGGUGCu -3'
miRNA:   3'- -GCUUU--AUA-GGCCCUua------CGCuuUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.