miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2891 3' -47.3 NC_001493.1 + 15319 1.15 0.008593
Target:  5'- cCGAAAUAUCCGGGAAUGCGAAAGCGCg -3'
miRNA:   3'- -GCUUUAUAGGCCCUUACGCUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 130873 1.15 0.008593
Target:  5'- cCGAAAUAUCCGGGAAUGCGAAAGCGCg -3'
miRNA:   3'- -GCUUUAUAGGCCCUUACGCUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 69785 0.8 0.681102
Target:  5'- -uGAAUGUCaCGGGGAUGgGGAAGCGg -3'
miRNA:   3'- gcUUUAUAG-GCCCUUACgCUUUCGCg -5'
2891 3' -47.3 NC_001493.1 + 130678 0.77 0.840476
Target:  5'- aCGAGGUcGUCCaGGAGcgguaGCGGGAGCGCu -3'
miRNA:   3'- -GCUUUA-UAGGcCCUUa----CGCUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 15124 0.77 0.840476
Target:  5'- aCGAGGUcGUCCaGGAGcgguaGCGGGAGCGCu -3'
miRNA:   3'- -GCUUUA-UAGGcCCUUa----CGCUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 90056 0.76 0.880232
Target:  5'- uGggGUAuagcgcauUCCGGGAauguaggAUGCGGuauAGCGCu -3'
miRNA:   3'- gCuuUAU--------AGGCCCU-------UACGCUu--UCGCG- -5'
2891 3' -47.3 NC_001493.1 + 128467 0.74 0.921318
Target:  5'- gGGAAgGUUCGGGAGUGgGGgucucgguggaGAGCGCc -3'
miRNA:   3'- gCUUUaUAGGCCCUUACgCU-----------UUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 12913 0.74 0.921318
Target:  5'- gGGAAgGUUCGGGAGUGgGGgucucgguggaGAGCGCc -3'
miRNA:   3'- gCUUUaUAGGCCCUUACgCU-----------UUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 116966 0.73 0.952005
Target:  5'- uGAAAaGUCCaccGGGAcUGCGAAAGUGa -3'
miRNA:   3'- gCUUUaUAGG---CCCUuACGCUUUCGCg -5'
2891 3' -47.3 NC_001493.1 + 1412 0.73 0.952005
Target:  5'- uGAAAaGUCCaccGGGAcUGCGAAAGUGa -3'
miRNA:   3'- gCUUUaUAGG---CCCUuACGCUUUCGCg -5'
2891 3' -47.3 NC_001493.1 + 46173 0.73 0.960123
Target:  5'- uGAGAUGUCCaGGAucuucaGUGCGGuaugGAGCaGCg -3'
miRNA:   3'- gCUUUAUAGGcCCU------UACGCU----UUCG-CG- -5'
2891 3' -47.3 NC_001493.1 + 109180 0.73 0.960123
Target:  5'- gCGAuGGUAUggagcCCGGGAGaGCGcgGGCGCg -3'
miRNA:   3'- -GCU-UUAUA-----GGCCCUUaCGCuuUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 45877 0.72 0.970438
Target:  5'- gCGAGAUGUgCGGGc-UGCGcGAGGCGg -3'
miRNA:   3'- -GCUUUAUAgGCCCuuACGC-UUUCGCg -5'
2891 3' -47.3 NC_001493.1 + 9925 0.71 0.978686
Target:  5'- gCGGAG-AUCCGGGucUGaaGGGAGCGCc -3'
miRNA:   3'- -GCUUUaUAGGCCCuuACg-CUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 125479 0.71 0.978686
Target:  5'- gCGGAG-AUCCGGGucUGaaGGGAGCGCc -3'
miRNA:   3'- -GCUUUaUAGGCCCuuACg-CUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 54354 0.71 0.983147
Target:  5'- uGAGAUGUUCGGGu-UGCuGGAGGCu- -3'
miRNA:   3'- gCUUUAUAGGCCCuuACG-CUUUCGcg -5'
2891 3' -47.3 NC_001493.1 + 38400 0.7 0.988467
Target:  5'- -------aCCGGGAGgagcaCGAAGGCGCg -3'
miRNA:   3'- gcuuuauaGGCCCUUac---GCUUUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 82987 0.7 0.989777
Target:  5'- aCGAGAcggcUCCccacugaGGGAAUGCGAGuaaagaaaacGGCGCc -3'
miRNA:   3'- -GCUUUau--AGG-------CCCUUACGCUU----------UCGCG- -5'
2891 3' -47.3 NC_001493.1 + 126372 0.69 0.99342
Target:  5'- uCGAAc---CCGGGGAgcucgcGCGAucGGGCGCg -3'
miRNA:   3'- -GCUUuauaGGCCCUUa-----CGCU--UUCGCG- -5'
2891 3' -47.3 NC_001493.1 + 51463 0.69 0.99342
Target:  5'- uGAAG-AUCgGGGcgaGCGGGAGCGUg -3'
miRNA:   3'- gCUUUaUAGgCCCuuaCGCUUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.