miRNA display CGI


Results 41 - 60 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28916 3' -64.9 NC_006146.1 + 34100 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 34115 0.79 0.092778
Target:  5'- cGCGCCCCGUUCACGGggGAGGaucgcggccGGGCCu -3'
miRNA:   3'- -CGUGGGGCAGGUGCCggCUCC---------CCCGG- -5'
28916 3' -64.9 NC_006146.1 + 34193 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 34286 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 34379 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 34472 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 34565 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 34658 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 34751 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 34844 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 34936 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 35029 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 35122 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 35215 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 35308 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 35401 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 35494 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 35587 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 35680 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 36745 0.66 0.570201
Target:  5'- gGCcCCCCucuuaggguUCCGCaGGCCGcguaAGGGGGUg -3'
miRNA:   3'- -CGuGGGGc--------AGGUG-CCGGC----UCCCCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.