miRNA display CGI


Results 21 - 40 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28916 3' -64.9 NC_006146.1 + 23745 0.74 0.197949
Target:  5'- uGCGCCgCCGccgggucaacugCCGCGGCCGAGaauGGcGGCCu -3'
miRNA:   3'- -CGUGG-GGCa-----------GGUGCCGGCUC---CC-CCGG- -5'
28916 3' -64.9 NC_006146.1 + 24089 0.66 0.578615
Target:  5'- cGCgGCCUCG-CCugGGacgcgggUCGAGGGcGGCUg -3'
miRNA:   3'- -CG-UGGGGCaGGugCC-------GGCUCCC-CCGG- -5'
28916 3' -64.9 NC_006146.1 + 26693 0.7 0.33983
Target:  5'- -aGCCCUGUCUAgGGCCGggagaggcagccccgAGGcGGGCa -3'
miRNA:   3'- cgUGGGGCAGGUgCCGGC---------------UCC-CCCGg -5'
28916 3' -64.9 NC_006146.1 + 31456 0.73 0.238425
Target:  5'- gGCACCCC--CC-CGGgcaCCGuGGGGGCCu -3'
miRNA:   3'- -CGUGGGGcaGGuGCC---GGCuCCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 31501 0.72 0.284363
Target:  5'- gGCACCUCccCCGgcGCCGuGGGGGCCu -3'
miRNA:   3'- -CGUGGGGcaGGUgcCGGCuCCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 32916 0.69 0.380957
Target:  5'- cGCACCCCccaccCCGcCGGCCcccGGGaGGCCc -3'
miRNA:   3'- -CGUGGGGca---GGU-GCCGGcu-CCC-CCGG- -5'
28916 3' -64.9 NC_006146.1 + 33009 0.77 0.131517
Target:  5'- -gGCCCUGUCCACGGggacccccugccggcCCGGGgcGGGGCCc -3'
miRNA:   3'- cgUGGGGCAGGUGCC---------------GGCUC--CCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 33139 0.72 0.26057
Target:  5'- cGCuGCCCCGcUCCG-GGUgGGGGGuGGCCc -3'
miRNA:   3'- -CG-UGGGGC-AGGUgCCGgCUCCC-CCGG- -5'
28916 3' -64.9 NC_006146.1 + 33198 0.69 0.4123
Target:  5'- gGCAcCCCCGgggggaGGCCGgaGGGGGaGCCg -3'
miRNA:   3'- -CGU-GGGGCaggug-CCGGC--UCCCC-CGG- -5'
28916 3' -64.9 NC_006146.1 + 33263 0.72 0.26057
Target:  5'- cGCuGCCCCGcUCCG-GGUgGGGGGuGGCCc -3'
miRNA:   3'- -CG-UGGGGC-AGGUgCCGgCUCCC-CCGG- -5'
28916 3' -64.9 NC_006146.1 + 33357 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 33385 0.72 0.26057
Target:  5'- cGCuGCCCCGcUCCG-GGUgGGGGGuGGCCc -3'
miRNA:   3'- -CG-UGGGGC-AGGUgCCGgCUCCC-CCGG- -5'
28916 3' -64.9 NC_006146.1 + 33450 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 33543 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 33636 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 33729 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 33822 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 33915 0.67 0.515044
Target:  5'- aGCGgCCCGgCCACccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc---CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 34007 0.66 0.560887
Target:  5'- aGCGgCCCGgCCACcccccGCCgGAGcGGGGCa -3'
miRNA:   3'- -CGUgGGGCaGGUGc----CGG-CUC-CCCCGg -5'
28916 3' -64.9 NC_006146.1 + 34037 0.68 0.469928
Target:  5'- gGCGuggUCCCGgggCCuaugcCGGCCGGGggucccguggcacGGGGCCg -3'
miRNA:   3'- -CGU---GGGGCa--GGu----GCCGGCUC-------------CCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.