miRNA display CGI


Results 21 - 40 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28916 3' -64.9 NC_006146.1 + 135535 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 135349 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 135256 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 135999 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 136278 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 136650 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 136464 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 136185 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 137114 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 137021 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 136928 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 137300 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 136742 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 137486 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 137207 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 137393 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 135442 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 131060 0.76 0.153878
Target:  5'- aGC-CCCCG-CCggcccacuguGCGGCCGAGGccgccGGGCCg -3'
miRNA:   3'- -CGuGGGGCaGG----------UGCCGGCUCC-----CCCGG- -5'
28916 3' -64.9 NC_006146.1 + 58453 0.75 0.161307
Target:  5'- -aGCCCaGUgaccaCCACGGCCgGAGGGGGCg -3'
miRNA:   3'- cgUGGGgCA-----GGUGCCGG-CUCCCCCGg -5'
28916 3' -64.9 NC_006146.1 + 135212 0.75 0.17714
Target:  5'- cGCuGCCCCG-CUcCGGCgGGGGGuGGCCg -3'
miRNA:   3'- -CG-UGGGGCaGGuGCCGgCUCCC-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.