miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28916 3' -64.9 NC_006146.1 + 14667 1.11 0.000487
Target:  5'- gGCACCCCGUCCACGGCCGAGGGGGCCc -3'
miRNA:   3'- -CGUGGGGCAGGUGCCGGCUCCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 41035 0.84 0.038811
Target:  5'- gGCAucucccCCCCGUCCGCGGCgGcccuGGGGGCCu -3'
miRNA:   3'- -CGU------GGGGCAGGUGCCGgCu---CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 137946 0.84 0.042709
Target:  5'- cGCGCCCCGUucacgggggaggaUCGCGGCCGGgccucccGGGGGCCc -3'
miRNA:   3'- -CGUGGGGCA-------------GGUGCCGGCU-------CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 168483 0.83 0.05117
Target:  5'- -gGCCUcaCGUCCACGGUCG-GGGGGCCg -3'
miRNA:   3'- cgUGGG--GCAGGUGCCGGCuCCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 135721 0.82 0.057984
Target:  5'- cGCugCCCGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGGCAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 71851 0.8 0.080059
Target:  5'- gGCACCCCGacacCCGCcgGGCCcuGGGGGGCCu -3'
miRNA:   3'- -CGUGGGGCa---GGUG--CCGGc-UCCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 34115 0.79 0.092778
Target:  5'- cGCGCCCCGUUCACGGggGAGGaucgcggccGGGCCu -3'
miRNA:   3'- -CGUGGGGCAGGUGCCggCUCC---------CCCGG- -5'
28916 3' -64.9 NC_006146.1 + 14832 0.77 0.118316
Target:  5'- gGCACggucucgggCCCGgggCCGCgggaGGCCGAGGGGGCa -3'
miRNA:   3'- -CGUG---------GGGCa--GGUG----CCGGCUCCCCCGg -5'
28916 3' -64.9 NC_006146.1 + 4657 0.77 0.121204
Target:  5'- aUACCCCGccgUCCugGGCCGGGuGGGCg -3'
miRNA:   3'- cGUGGGGC---AGGugCCGGCUCcCCCGg -5'
28916 3' -64.9 NC_006146.1 + 33009 0.77 0.131517
Target:  5'- -gGCCCUGUCCACGGggacccccugccggcCCGGGgcGGGGCCc -3'
miRNA:   3'- cgUGGGGCAGGUGCC---------------GGCUC--CCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 137579 0.77 0.133419
Target:  5'- cGCugCCCgGUCCugGaGCuCGGgccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU---CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 114066 0.77 0.136646
Target:  5'- cGC-CCCCG-CCGCcagaGGCCGccucGGGGGCCa -3'
miRNA:   3'- -CGuGGGGCaGGUG----CCGGCu---CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 135349 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 135256 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 135442 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 135813 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 135906 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 135628 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 135535 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 135163 0.76 0.14676
Target:  5'- cGCugCCCgGUCCugGaGCuCGGggccGGGGGCCg -3'
miRNA:   3'- -CGugGGG-CAGGugC-CG-GCU----CCCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.