miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28916 3' -64.9 NC_006146.1 + 392 0.68 0.445188
Target:  5'- -gGCCCCGcCCGCcGCgCGcuGGGGGUCc -3'
miRNA:   3'- cgUGGGGCaGGUGcCG-GCu-CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 3703 0.68 0.453638
Target:  5'- aGCACCUgGUCagacacacagaCAgGGUCucuGGGGGCCg -3'
miRNA:   3'- -CGUGGGgCAG-----------GUgCCGGcu-CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 3984 0.66 0.551615
Target:  5'- gGCACCaaGUggCCAUGGUCGAGGcGcugaugaacgcGGCCu -3'
miRNA:   3'- -CGUGGggCA--GGUGCCGGCUCC-C-----------CCGG- -5'
28916 3' -64.9 NC_006146.1 + 4657 0.77 0.121204
Target:  5'- aUACCCCGccgUCCugGGCCGGGuGGGCg -3'
miRNA:   3'- cGUGGGGC---AGGugCCGGCUCcCCCGg -5'
28916 3' -64.9 NC_006146.1 + 7682 0.7 0.34195
Target:  5'- cGCuACCCUGcCUACGGCCugcccggcuccucuGAGGGGcagaaGCCa -3'
miRNA:   3'- -CG-UGGGGCaGGUGCCGG--------------CUCCCC-----CGG- -5'
28916 3' -64.9 NC_006146.1 + 9448 0.67 0.533217
Target:  5'- uCACCCUGUgUCACGGUgGGcGcGGGGUCc -3'
miRNA:   3'- cGUGGGGCA-GGUGCCGgCU-C-CCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 14381 0.7 0.33983
Target:  5'- -aGCCCUGUCUAgGGCCGggagaggcagccccgAGGcGGGCa -3'
miRNA:   3'- cgUGGGGCAGGUgCCGGC---------------UCC-CCCGg -5'
28916 3' -64.9 NC_006146.1 + 14667 1.11 0.000487
Target:  5'- gGCACCCCGUCCACGGCCGAGGGGGCCc -3'
miRNA:   3'- -CGUGGGGCAGGUGCCGGCUCCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 14782 0.73 0.227955
Target:  5'- gGCA-CCUGUUgGCGGCUGAGGGGaaggagagGCCg -3'
miRNA:   3'- -CGUgGGGCAGgUGCCGGCUCCCC--------CGG- -5'
28916 3' -64.9 NC_006146.1 + 14832 0.77 0.118316
Target:  5'- gGCACggucucgggCCCGgggCCGCgggaGGCCGAGGGGGCa -3'
miRNA:   3'- -CGUG---------GGGCa--GGUG----CCGGCUCCCCCGg -5'
28916 3' -64.9 NC_006146.1 + 15696 0.69 0.420381
Target:  5'- aCACCUucaucaCGgggCCACuGGCCGAggagaGGGGGCUg -3'
miRNA:   3'- cGUGGG------GCa--GGUG-CCGGCU-----CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 17459 0.7 0.33983
Target:  5'- -aGCCCUGUCUAgGGCCGggagaggcagccccgAGGcGGGCa -3'
miRNA:   3'- cgUGGGGCAGGUgCCGGC---------------UCC-CCCGg -5'
28916 3' -64.9 NC_006146.1 + 18376 0.67 0.506051
Target:  5'- uCACCCUgGUCCuggUGGCCGGGGuGGUg -3'
miRNA:   3'- cGUGGGG-CAGGu--GCCGGCUCCcCCGg -5'
28916 3' -64.9 NC_006146.1 + 18850 0.7 0.34195
Target:  5'- -gACCCCGggCGCuGCCGGggugguggacgugcGGGGGCCu -3'
miRNA:   3'- cgUGGGGCagGUGcCGGCU--------------CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 19705 0.67 0.515044
Target:  5'- uGCGuCCUCugGUCCACGGggGAGGaGGCCg -3'
miRNA:   3'- -CGU-GGGG--CAGGUGCCggCUCCcCCGG- -5'
28916 3' -64.9 NC_006146.1 + 20407 0.67 0.496238
Target:  5'- uGCcCUCCGccUCCgacagggACGGCUaccAGGGGGCCa -3'
miRNA:   3'- -CGuGGGGC--AGG-------UGCCGGc--UCCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 20537 0.7 0.33983
Target:  5'- -aGCCCUGUCUAgGGCCGggagaggcagccccgAGGcGGGCa -3'
miRNA:   3'- cgUGGGGCAGGUgCCGGC---------------UCC-CCCGg -5'
28916 3' -64.9 NC_006146.1 + 20796 0.73 0.249295
Target:  5'- uGCaACgCCGUCUACGGCUucacuGGGGuGGCCa -3'
miRNA:   3'- -CG-UGgGGCAGGUGCCGGc----UCCC-CCGG- -5'
28916 3' -64.9 NC_006146.1 + 23449 0.72 0.272258
Target:  5'- gGCugCCCGUCU-CGGCCuacGAGGcccuGGCCg -3'
miRNA:   3'- -CGugGGGCAGGuGCCGG---CUCCc---CCGG- -5'
28916 3' -64.9 NC_006146.1 + 23615 0.7 0.33983
Target:  5'- -aGCCCUGUCUAgGGCCGggagaggcagccccgAGGcGGGCa -3'
miRNA:   3'- cgUGGGGCAGGUgCCGGC---------------UCC-CCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.