miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28916 3' -64.9 NC_006146.1 + 139445 0.66 0.570201
Target:  5'- -gGCCCC---CACGGugcCCGGGGGGGUg -3'
miRNA:   3'- cgUGGGGcagGUGCC---GGCUCCCCCGg -5'
28916 3' -64.9 NC_006146.1 + 128480 0.66 0.598346
Target:  5'- cGCACCCagcugCGUCUcgccuucgaggACGGCguCGGGGuGGCCc -3'
miRNA:   3'- -CGUGGG-----GCAGG-----------UGCCG--GCUCCcCCGG- -5'
28916 3' -64.9 NC_006146.1 + 157714 0.66 0.560887
Target:  5'- gGCGCCCgGagCGaGGCCGGGcaGGCCg -3'
miRNA:   3'- -CGUGGGgCagGUgCCGGCUCccCCGG- -5'
28916 3' -64.9 NC_006146.1 + 107580 0.66 0.568335
Target:  5'- aUACaCCG-CCACGGCggucagaaugcaGAGGGuGGCCa -3'
miRNA:   3'- cGUGgGGCaGGUGCCGg-----------CUCCC-CCGG- -5'
28916 3' -64.9 NC_006146.1 + 112494 0.66 0.568335
Target:  5'- cGCGCUCauagagauagcgGUCCAgGgGCCGGuGGaGGGCCu -3'
miRNA:   3'- -CGUGGGg-----------CAGGUgC-CGGCU-CC-CCCGG- -5'
28916 3' -64.9 NC_006146.1 + 142426 0.66 0.570201
Target:  5'- gGCgACCCUGgggucugUCugGGggaCUGAGGGcGGCCg -3'
miRNA:   3'- -CG-UGGGGCa------GGugCC---GGCUCCC-CCGG- -5'
28916 3' -64.9 NC_006146.1 + 145504 0.66 0.570201
Target:  5'- gGCgACCCUGgggucugUCugGGggaCUGAGGGcGGCCg -3'
miRNA:   3'- -CG-UGGGGCa------GGugCC---GGCUCCC-CCGG- -5'
28916 3' -64.9 NC_006146.1 + 148582 0.66 0.570201
Target:  5'- gGCgACCCUGgggucugUCugGGggaCUGAGGGcGGCCg -3'
miRNA:   3'- -CG-UGGGGCa------GGugCC---GGCUCCC-CCGG- -5'
28916 3' -64.9 NC_006146.1 + 154737 0.66 0.570201
Target:  5'- gGCgACCCUGgggucugUCugGGggaCUGAGGGcGGCCg -3'
miRNA:   3'- -CG-UGGGGCa------GGugCC---GGCUCCC-CCGG- -5'
28916 3' -64.9 NC_006146.1 + 157815 0.66 0.570201
Target:  5'- gGCgACCCUGgggucugUCugGGggaCUGAGGGcGGCCg -3'
miRNA:   3'- -CG-UGGGGCa------GGugCC---GGCUCCC-CCGG- -5'
28916 3' -64.9 NC_006146.1 + 115074 0.66 0.570201
Target:  5'- aCAUUCCGcCCACccaGGCCGGGacGGCCu -3'
miRNA:   3'- cGUGGGGCaGGUG---CCGGCUCccCCGG- -5'
28916 3' -64.9 NC_006146.1 + 117168 0.66 0.598346
Target:  5'- uCGCCCCGgcgcagCCGCGGCUcccggagagGAcGGGGaacguGCCc -3'
miRNA:   3'- cGUGGGGCa-----GGUGCCGG---------CU-CCCC-----CGG- -5'
28916 3' -64.9 NC_006146.1 + 165793 0.66 0.570201
Target:  5'- -aGCCaCGguggCACGGCCGgcuaGGGGGGCg -3'
miRNA:   3'- cgUGGgGCag--GUGCCGGC----UCCCCCGg -5'
28916 3' -64.9 NC_006146.1 + 36745 0.66 0.570201
Target:  5'- gGCcCCCCucuuaggguUCCGCaGGCCGcguaAGGGGGUg -3'
miRNA:   3'- -CGuGGGGc--------AGGUG-CCGGC----UCCCCCGg -5'
28916 3' -64.9 NC_006146.1 + 24089 0.66 0.578615
Target:  5'- cGCgGCCUCG-CCugGGacgcgggUCGAGGGcGGCUg -3'
miRNA:   3'- -CG-UGGGGCaGGugCC-------GGCUCCC-CCGG- -5'
28916 3' -64.9 NC_006146.1 + 127675 0.66 0.578615
Target:  5'- gGCACCCCaaagGUCCGCuGCaCGuacuccucguagcAGGacuGGGCCg -3'
miRNA:   3'- -CGUGGGG----CAGGUGcCG-GC-------------UCC---CCCGG- -5'
28916 3' -64.9 NC_006146.1 + 56976 0.66 0.579552
Target:  5'- -gACCCUGacggCCACcuGCUGguuaagauagaAGGGGGCCa -3'
miRNA:   3'- cgUGGGGCa---GGUGc-CGGC-----------UCCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 103125 0.66 0.588935
Target:  5'- cCGCCgucaCGUCCcUGGCCGAgcuGGGGGa- -3'
miRNA:   3'- cGUGGg---GCAGGuGCCGGCU---CCCCCgg -5'
28916 3' -64.9 NC_006146.1 + 166915 0.66 0.588935
Target:  5'- aGCGCCUCGaCCAUGGCC-AGcuuGGuGCCc -3'
miRNA:   3'- -CGUGGGGCaGGUGCCGGcUCc--CC-CGG- -5'
28916 3' -64.9 NC_006146.1 + 45226 0.66 0.597403
Target:  5'- aGCACgCCGcCCagcugaaGCGGCUGAGuGGGaGUg -3'
miRNA:   3'- -CGUGgGGCaGG-------UGCCGGCUC-CCC-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.