miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28916 3' -64.9 NC_006146.1 + 170687 0.67 0.497126
Target:  5'- gGCGCCCCGgggACcGUCGcGGGGGCa -3'
miRNA:   3'- -CGUGGGGCaggUGcCGGCuCCCCCGg -5'
28916 3' -64.9 NC_006146.1 + 170507 0.69 0.428558
Target:  5'- cGgACCCCcagCgCGCGGCgGGcGGGGCCu -3'
miRNA:   3'- -CgUGGGGca-G-GUGCCGgCUcCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 170188 0.66 0.588935
Target:  5'- --nUCCCGagggcggggCCGgGGCCuGGcGGGGGCCa -3'
miRNA:   3'- cguGGGGCa--------GGUgCCGG-CU-CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 170161 0.7 0.337018
Target:  5'- gGCGgCgCCGgCCgGgGGCUGAGGGGGCUc -3'
miRNA:   3'- -CGUgG-GGCaGG-UgCCGGCUCCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 170025 0.7 0.349084
Target:  5'- --cCCCCGUcugcucCCGCGGCCagucccuggaugucGGGGaGGGCCc -3'
miRNA:   3'- cguGGGGCA------GGUGCCGG--------------CUCC-CCCGG- -5'
28916 3' -64.9 NC_006146.1 + 169568 0.69 0.380957
Target:  5'- gGCuuCCCCGgggCCcgagcGCGcGUCGGGuGGGGCCu -3'
miRNA:   3'- -CGu-GGGGCa--GG-----UGC-CGGCUC-CCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 169257 0.66 0.588935
Target:  5'- --nUCCCGagggcggggCCGgGGCCuGGcGGGGGCCa -3'
miRNA:   3'- cguGGGGCa--------GGUgCCGG-CU-CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 169230 0.7 0.337018
Target:  5'- gGCGgCgCCGgCCgGgGGCUGAGGGGGCUc -3'
miRNA:   3'- -CGUgG-GGCaGG-UgCCGGCUCCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 169093 0.7 0.349084
Target:  5'- --cCCCCGUcugcucCCGCGGCCagucccuggaugucGGGGaGGGCCc -3'
miRNA:   3'- cguGGGGCA------GGUGCCGG--------------CUCC-CCCGG- -5'
28916 3' -64.9 NC_006146.1 + 168908 0.68 0.436828
Target:  5'- aGCGCgaCUGUCagcagguucuCGGagaCGAGGGGGCCc -3'
miRNA:   3'- -CGUGg-GGCAGgu--------GCCg--GCUCCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 168636 0.69 0.431855
Target:  5'- gGCuuCCCCGgggCCcgagcgcgcgucgguGgGGCCuGAGGGGGCg -3'
miRNA:   3'- -CGu-GGGGCa--GG---------------UgCCGG-CUCCCCCGg -5'
28916 3' -64.9 NC_006146.1 + 168483 0.83 0.05117
Target:  5'- -gGCCUcaCGUCCACGGUCG-GGGGGCCg -3'
miRNA:   3'- cgUGGG--GCAGGUGCCGGCuCCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 168325 0.66 0.588935
Target:  5'- --nUCCCGagggcggggCCGgGGCCuGGcGGGGGCCa -3'
miRNA:   3'- cguGGGGCa--------GGUgCCGG-CU-CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 168298 0.7 0.337018
Target:  5'- gGCGgCgCCGgCCgGgGGCUGAGGGGGCUc -3'
miRNA:   3'- -CGUgG-GGCaGG-UgCCGGCUCCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 168161 0.7 0.349084
Target:  5'- --cCCCCGUcugcucCCGCGGCCagucccuggaugucGGGGaGGGCCc -3'
miRNA:   3'- cguGGGGCA------GGUGCCGG--------------CUCC-CCCGG- -5'
28916 3' -64.9 NC_006146.1 + 167703 0.69 0.380957
Target:  5'- gGCuuCCCCGgggCCcgagcGCGcGUCGGGuGGGGCCu -3'
miRNA:   3'- -CGu-GGGGCa--GG-----UGC-CGGCUC-CCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 167634 0.66 0.560887
Target:  5'- gGguCCCgCGgggCC-CGGCgCGugccGGGGGCCc -3'
miRNA:   3'- -CguGGG-GCa--GGuGCCG-GCu---CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 167393 0.66 0.588935
Target:  5'- --nUCCCGagggcggggCCGgGGCCuGGcGGGGGCCa -3'
miRNA:   3'- cguGGGGCa--------GGUgCCGG-CU-CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 167366 0.7 0.337018
Target:  5'- gGCGgCgCCGgCCgGgGGCUGAGGGGGCUc -3'
miRNA:   3'- -CGUgG-GGCaGG-UgCCGGCUCCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 167229 0.7 0.349084
Target:  5'- --cCCCCGUcugcucCCGCGGCCagucccuggaugucGGGGaGGGCCc -3'
miRNA:   3'- cguGGGGCA------GGUGCCGG--------------CUCC-CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.