Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28916 | 5' | -57.7 | NC_006146.1 | + | 123927 | 0.7 | 0.626956 |
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Target: 5'- cGCAAUU-CCUGGCGGCggccgggCCGGcGAAa -3' miRNA: 3'- -CGUUGGuGGACCGCCGa------GGCCaCUUa -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 39467 | 0.7 | 0.637085 |
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Target: 5'- aUAACUuguGCCgUGGUGGCUCCGGUa--- -3' miRNA: 3'- cGUUGG---UGG-ACCGCCGAGGCCAcuua -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 72364 | 0.69 | 0.706439 |
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Target: 5'- -gGACCGgCUGGCGGCgacgaaacccgagUCgGGUGGGg -3' miRNA: 3'- cgUUGGUgGACCGCCG-------------AGgCCACUUa -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 81795 | 0.68 | 0.717298 |
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Target: 5'- gGguGCCACCUGG-GGCagugCCGGUa--- -3' miRNA: 3'- -CguUGGUGGACCgCCGa---GGCCAcuua -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 26476 | 0.68 | 0.727095 |
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Target: 5'- --cACCACUUGGCGugUCUGGUGAGa -3' miRNA: 3'- cguUGGUGGACCGCcgAGGCCACUUa -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 40422 | 0.68 | 0.736812 |
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Target: 5'- aGUAGCCACCcggGGCGGCagCGGc---- -3' miRNA: 3'- -CGUUGGUGGa--CCGCCGagGCCacuua -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 14782 | 0.67 | 0.78388 |
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Target: 5'- gGC-ACCugUUGGCGGCUgaGGgGAAg -3' miRNA: 3'- -CGuUGGugGACCGCCGAggCCaCUUa -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 121766 | 0.68 | 0.736812 |
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Target: 5'- cCGugCGCCUGGUGGCUuuGcaGAAUu -3' miRNA: 3'- cGUugGUGGACCGCCGAggCcaCUUA- -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 100248 | 0.66 | 0.859526 |
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Target: 5'- ---cCCGCUggcggggugUGaGCGGCUCUGGUGGGg -3' miRNA: 3'- cguuGGUGG---------AC-CGCCGAGGCCACUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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